Description

<dependency>
    <groupId>org.rcsb</groupId>
    <artifactId>mmtf-update</artifactId>
    <version>0.0.1-alpha3</version>
</dependency>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>org.rcsb</groupId>
		<artifactId>mmtf</artifactId>
		<version>0.0.1-alpha3</version>
	</parent>
	<artifactId>mmtf-update</artifactId>
	<packaging>jar</packaging>

	<name>mmtf-update</name>
	<url>http://maven.apache.org</url>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
	</properties>

	<dependencies>
		<dependency>
			<groupId>org.rcsb</groupId>
			<artifactId>mmtf-api</artifactId>
			<version>0.0.1-alpha3</version>
		</dependency>
		<dependency>
			<groupId>org.rcsb</groupId>
			<artifactId>mmtf-encoder</artifactId>
			<version>0.0.1-alpha3</version>
		</dependency>
		<dependency>
			<groupId>org.rcsb</groupId>
			<artifactId>mmtf-common</artifactId>
			<version>0.0.1-alpha3</version>
		</dependency>
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.11</version>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-structure</artifactId>
			<version>5.0.0-alpha3</version>
		</dependency>
		<dependency>
			<groupId>org.apache.spark</groupId>
			<artifactId>spark-core_2.11</artifactId>
			<version>1.6.0</version>
		</dependency>
	</dependencies>
	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jar-plugin</artifactId>
				<configuration>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>

				<configuration>
					<debug>true</debug>
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-shade-plugin</artifactId>
				<executions>
					<execution>
						<phase>package</phase>
						<goals>
							<goal>shade</goal>
						</goals>
						<configuration>
							<shadedArtifactAttached>true</shadedArtifactAttached>
							<shadedClassifierName>allinone</shadedClassifierName>
							<artifactSet>
								<includes>
									<include>*:*</include>
								</includes>
							</artifactSet>
							<transformers>
								<transformer implementation="org.apache.maven.plugins.shade.resource.AppendingTransformer">
									<resource>reference.conf</resource>
								</transformer>
								<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
									<manifestEntries>
										<Main-Class>akka.Main</Main-Class>
									</manifestEntries>
								</transformer>
							</transformers>
							<artifactSet>
								<excludes>
								</excludes>
							</artifactSet>
							<filters>
								<filter>
									<!-- solution to the signature repackaging problem is this filter: 
										exclude the signatures! -->
									<artifact>*:*</artifact>
									<excludes>
										<exclude>META-INF/*.SF</exclude>
										<exclude>META-INF/*.DSA</exclude>
										<exclude>META-INF/*.RSA</exclude>
									</excludes>
								</filter>
							</filters>
						</configuration>
					</execution>
				</executions>
				<configuration>
					<finalName>uber-${project.artifactId}-${project.version}</finalName>
				</configuration>
			</plugin>
		</plugins>
	</build>

	<reporting>
		<plugins>
			<plugin>
				<artifactId>maven-javadoc-plugin</artifactId>
				<version>2.10.1</version>
				<configuration>
					<aggregate>true</aggregate>
					<breakiterator>true</breakiterator>
					<quiet>true</quiet>
					<source>1.8</source>
					<verbose>false</verbose>
					<linksource>true</linksource>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>findbugs-maven-plugin</artifactId>
				<version>3.0.3</version>
			</plugin>
		</plugins>
	</reporting>


</project>