cdk-scaffold

pkg:maven/org.openscience.cdk/cdk-scaffold@2.12

Used in:

components

Overview
Overview

Versions
Versions

Dependents
Dependents

Dependencies
Dependencies

Overview

Description

CDK-Scaffold is an extension of the core CDK libraries providing versatile molecular scaffold functionalities.

<dependency>
    <groupId>org.openscience.cdk</groupId>
    <artifactId>cdk-scaffold</artifactId>
    <version>2.12</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>org.openscience.cdk</groupId>
    <artifactId>cdk-scaffold</artifactId>
    <name>cdk-scaffold</name>
    <version>2.12</version>
    <packaging>jar</packaging>

    <url>https://github.com/cdk/cdk-scaffold</url>
    <description>
      CDK-Scaffold is an extension of the core CDK libraries providing versatile
      molecular scaffold functionalities.
    </description>

    <properties>
        <argLine></argLine>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <sonar.organization>cdk</sonar.organization>
        <sonar.language>java</sonar.language>
        <sonar.java.coveragePlugin>jacoco</sonar.java.coveragePlugin>
        <sonar.dynamicAnalysis>reuseReports</sonar.dynamicAnalysis>
        <!--suppress UnresolvedMavenProperty -->
        <sonar.coverage.jacoco.xmlReportPaths>${maven.multiModuleProjectDirectory}/bundle/target/site/jacoco-aggregate/jacoco.xml</sonar.coverage.jacoco.xmlReportPaths>
        <sonar.host.url>https://sonarcloud.io</sonar.host.url>
        <cdk.version>2.12</cdk.version>
        <junit.version>5.9.3</junit.version>
        <hamcrest.version>2.2</hamcrest.version>
        <jacoco.version>0.8.15</jacoco.version>
    </properties>

    <licenses>
        <license>
            <name>GNU LGPL 2.1 or later</name>
            <url>http://www.gnu.org/licenses/lgpl.html</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <scm>
        <url>https://github.com/cdk/cdk-scaffold</url>
        <connection>scm:git:git://github.com/cdk/cdk-scaffold.git</connection>
        <developerConnection>scm:git:git@github.com:cdk/cdk-scaffold.git</developerConnection>
    </scm>

    <issueManagement>
        <url>https://github.com/cdk/cdk/issues</url>
        <system>SourceForge Tracker</system>
    </issueManagement>

    <developers>
        <developer>
            <name>Jonas Schaub</name>
            <email>jonas.schaub@uni-jena.de</email>
            <organization>Friedrich Schiller University Jena</organization>
            <organizationUrl>https://cheminf.uni-jena.de</organizationUrl>
        </developer>
        <developer>
            <name>Egon Willighagen</name>
            <email>egon.willighagen@maastrichtuniversity.nl</email>
            <organization>Maastricht University</organization>
            <organizationUrl>https://www.maastrichtuniversity.nl/research/translational-genomics</organizationUrl>
        </developer>
        <developer>
            <name>John Mayfield</name>
            <email>john@nextmovesoftware.com</email>
            <url>http://www.github.com/johnmay/</url>
        </developer>
        <developer>
            <name>Julian Zander</name>
            <url>https://github.com/Julian-W98</url>
        </developer>
        <developer>
            <name>Christoph Steinbeck</name>
            <email>christoph.steinbeck@uni-jena.de</email>
            <organization>Friedrich Schiller University Jena</organization>
            <organizationUrl>https://cheminf.uni-jena.de</organizationUrl>
        </developer>
        <developer>
            <name>Achim Zielesny</name>
            <email>achim.zielesny@w-hs.de</email>
            <organization>Westphalian University of Applied Sciences</organization>
            <organizationUrl>https://www.en.w-hs.de</organizationUrl>
        </developer>
    </developers>

    <!-- define the cdk.repo.url and cdk.repo.snapshots.url properties in 
         ~/.m2/settings.xml -->
    <distributionManagement>
        <snapshotRepository>
            <id>central</id>
            <url>https://central.sonatype.com/repository/maven-snapshots/</url>
        </snapshotRepository>
        <repository>
            <id>central</id>
            <url>https://central.sonatype.com/</url>
            <layout>default</layout>
        </repository>
    </distributionManagement>
    <repositories>
        <repository>
            <id>central-snapshots</id>
            <url>https://central.sonatype.com/repository/maven-snapshots/</url>
        </repository>
    </repositories>

    <dependencies>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <scope>test</scope>
            <version>${junit.version}</version>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-params</artifactId>
            <scope>test</scope>
            <version>${junit.version}</version>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <scope>test</scope>
            <version>${junit.version}</version>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-core</artifactId>
            <scope>test</scope>
            <version>${hamcrest.version}</version>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest</artifactId>
            <scope>test</scope>
            <version>${hamcrest.version}</version>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-interfaces</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-core</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-standard</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-fragment</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-data</artifactId>
            <version>${cdk.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-depict</artifactId>
            <version>${cdk.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>${project.groupId}</groupId>
            <artifactId>cdk-io</artifactId>
            <version>${cdk.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-test</artifactId>
            <version>${cdk.version}</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <!-- Plugin repository (EBI) is required for cdk-build-utils and
         ojdcheck to build the javadoc. -->
    <pluginRepositories>
        <pluginRepository>
            <id>ebi-repo</id>
            <name>EBI Maven Repository</name>
            <url>https://www.ebi.ac.uk/~maven/m2repo/</url>
            <releases>
                <enabled>true</enabled>
                <updatePolicy>never</updatePolicy>
            </releases>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
        </pluginRepository>
    </pluginRepositories>

    <build>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.jacoco</groupId>
                    <artifactId>jacoco-maven-plugin</artifactId>
                    <version>${jacoco.version}</version>
                </plugin>
            </plugins>
        </pluginManagement>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.15.0</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>3.6.0-M1</version>
                <configuration>
                    <!-- prevent the annoying ForkedBooter process from stealing
                         window focus on Mac OS -->
                    <argLine>@{argLine} -Djava.awt.headless=true -Dcdk.logging.level=ERROR</argLine>
                    <excludes>
                        <!-- not a test class -->
                        <exclude>**/TestMoleculeFactory.java</exclude>
                        <!-- missing functionality -->
                        <exclude>**/cdk/limitations/**</exclude>
                        <!-- format tests do not work (cyclic dependency) -->
                        <exclude>**/io/formats/*FormatTest.java</exclude>
                    </excludes>
                    <excludedGroups>SlowTest</excludedGroups>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>3.5.0</version>
                <inherited>true</inherited>
                <configuration>
                    <archive>
                        <manifest>
                            <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
                        </manifest>
                        <manifestFile>${project.build.outputDirectory}/META-INF/MANIFEST.MF</manifestFile>
                    </archive>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>3.12.0</version>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>aggregate</id>
                        <goals>
                            <goal>aggregate</goal>
                        </goals>
                        <phase>site</phase>
                        <configuration>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.felix</groupId>
                <artifactId>maven-bundle-plugin</artifactId>
                <version>5.1.8</version>
                <configuration>
                    <instructions>
                        <Export-Package>org.openscience.*</Export-Package>
                    </instructions>
                </configuration>
                <executions>
                    <execution>
                        <id>bundle-manifest</id>
                        <phase>process-classes</phase>
                        <goals>
                            <goal>manifest</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-dependency-plugin</artifactId>
                <version>3.6.1</version>
            </plugin>
            <plugin>
                <groupId>org.sonatype.central</groupId>
                <artifactId>central-publishing-maven-plugin</artifactId>
                <version>0.9.0</version>
                <extensions>true</extensions>
                <configuration>
                    <publishingServerId>central</publishingServerId>
                    <autoPublish>true</autoPublish>
                    <waitUntil>published</waitUntil>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-gpg-plugin</artifactId>
                <version>3.2.8</version>
                <executions>
                    <execution>
                        <id>sign-artifacts</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>sign</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>3.4.0</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <goals>
                            <goal>jar-no-fork</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>

</project>