hpg-bigdata
Used in:
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- DependenciesDependencies
<dependency>
<groupId>org.opencb.hpg</groupId>
<artifactId>hpg-bigdata</artifactId>
<version>0.5.0</version>
</dependency><?xml version="1.0" encoding="UTF-8"?>
<!--
~ Copyright 2015 OpenCB
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.opencb.hpg</groupId>
<artifactId>hpg-bigdata</artifactId>
<version>0.5.0</version>
<packaging>pom</packaging>
<modules>
<module>hpg-bigdata-app</module>
<module>hpg-bigdata-core</module>
<module>hpg-bigdata-tools</module>
</modules>
<name>HPG Big data project</name>
<description>HPG Big data project aims to manage genomic big data in a Hadoop-based cluster</description>
<url>https://github.com/opencb/hpg-bigdata</url>
<properties>
<hpg.version>0.5.0</hpg.version>
<ga4gh.version>0.5.1</ga4gh.version>
<biodata.version>0.5.1</biodata.version>
<datastore.version>0.4.0</datastore.version>
<commons-lib.version>3.0.0</commons-lib.version>
<hadoop.version>2.6.0</hadoop.version>
<hbase.version>1.0.1</hbase.version>
<compileSource>1.8</compileSource>
<build.dir>build</build.dir>
</properties>
<scm>
<url>https://github.com/opencb/cellbase</url>
<connection>scm:git:git://github.com/opencb/cellbase.git</connection>
<developerConnection>scm:git:git@github.com:opencb/cellbase.git</developerConnection>
</scm>
<licenses>
<license>
<name>Apache License, Version 2</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<developers>
<developer>
<id>imedina</id>
<name>Nacho</name>
<email>igmecas@gmail.com</email>
</developer>
<developer>
<id>jtarraga</id>
<name>Joaquin</name>
<email>joaquintarraga@gmail.com</email>
</developer>
<developer>
<id>jcoll</id>
<name>Jacobo</name>
<email>jacobo167@gmail.com</email>
</developer>
<developer>
<id>mh11</id>
<name>Matthias</name>
<email>mh719@cam.ac.uk</email>
</developer>
</developers>
<mailingLists>
<mailingList>
<name>OpenCB Mailing List</name>
<archive>https://groups.google.com/forum/#!forum/opencb</archive>
<post>opencb@googlegroups.com</post>
</mailingList>
</mailingLists>
<dependencyManagement>
<dependencies>
<!-- Intra-module dependencies -->
<dependency>
<groupId>org.opencb.hpg</groupId>
<artifactId>hpg-bigdata-core</artifactId>
<version>${hpg.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.hpg</groupId>
<artifactId>hpg-bigdata-tools</artifactId>
<version>${hpg.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.ga4gh</groupId>
<artifactId>ga4gh</artifactId>
<version>${ga4gh.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.commons</groupId>
<artifactId>commons-lib</artifactId>
<version>${commons-lib.version}</version>
</dependency>
<dependency>
<groupId>org.apache.hbase</groupId>
<artifactId>hbase-common</artifactId>
<version>${hbase.version}</version>
</dependency>
<dependency>
<groupId>org.apache.hbase</groupId>
<artifactId>hbase-client</artifactId>
<version>${hbase.version}</version>
</dependency>
<dependency>
<groupId>org.apache.hbase</groupId>
<artifactId>hbase-server</artifactId>
<version>${hbase.version}</version>
<!-- <exclusions> -->
<!-- <exclusion> -->
<!-- <groupId>org.apache.hadoop</groupId> -->
<!-- <artifactId>hadoop-client</artifactId> -->
<!-- </exclusion> -->
<!-- </exclusions> -->
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-client</artifactId>
<version>${hadoop.version}</version>
</dependency>
<dependency>
<groupId>org.apache.hadoop</groupId>
<artifactId>hadoop-common</artifactId>
<version>${hadoop.version}</version>
</dependency>
<!-- General dependencies -->
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>18.0</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>1.7.12</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>1.7.12</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.5.4</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<!-- <dependency> -->
<!-- <groupId>jdk.tools</groupId> -->
<!-- <artifactId>jdk.tools</artifactId> -->
<!-- <version>${compileSource}</version> -->
<!-- <scope>system</scope> -->
<!-- <systemPath>${java.home}/lib/tools.jar</systemPath> -->
<!-- </dependency> -->
</dependencies>
</dependencyManagement>
<build>
<sourceDirectory>src/main/java</sourceDirectory>
<testSourceDirectory>src/test/java</testSourceDirectory>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.2</version>
<configuration>
<source>${compileSource}</source>
<target>${compileSource}</target>
<showDeprecation>true</showDeprecation>
<showWarnings>true</showWarnings>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.4</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.1</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
<configuration>
<additionalparam>-Xdoclint:none</additionalparam>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>deploy</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.5</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
<!--<plugin>-->
<!--<groupId>org.apache.maven.plugins</groupId>-->
<!--<artifactId>maven-shade-plugin</artifactId>-->
<!--<version>2.4</version>-->
<!--<executions>-->
<!--<execution>-->
<!--<phase>package</phase>-->
<!--<goals>-->
<!--<goal>shade</goal>-->
<!--</goals>-->
<!--<configuration>-->
<!--<artifactSet>-->
<!--<includes>-->
<!--<include>org.apache.avro:avro</include>-->
<!--</includes>-->
<!--</artifactSet>-->
<!--<relocations>-->
<!--<relocation>-->
<!--<pattern>org.apache.avro</pattern>-->
<!--<shadedPattern>org.opencb.shaded.org.apache.avros</shadedPattern>-->
<!--</relocation>-->
<!--</relocations>-->
<!--</configuration>-->
<!--</execution>-->
<!--</executions>-->
<!--</plugin>-->
<!--
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass></mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>
jar-with-dependencies
</descriptorRef>
</descriptorRefs>
</configuration>
<executions>
<execution>
<id>make-assembly</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
-->
</plugins>
</build>
<distributionManagement>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
</distributionManagement>
</project>