Description

<dependency>
    <groupId>org.opencb.hpg</groupId>
    <artifactId>hpg-bigdata-core</artifactId>
    <version>0.5.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<!--
  ~ Copyright 2015 OpenCB
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~     http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  -->

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

    <parent>
		<groupId>org.opencb.hpg</groupId>
		<artifactId>hpg-bigdata</artifactId>
		<version>0.5.0</version>
		<relativePath>../pom.xml</relativePath>
	</parent>

	<artifactId>hpg-bigdata-core</artifactId>
	<version>${hpg.version}</version>

	<dependencies>
		<dependency>
			<groupId>org.opencb.ga4gh</groupId>
			<artifactId>ga4gh</artifactId>
		</dependency>
		<dependency>
			<groupId>org.opencb.biodata</groupId>
			<artifactId>biodata-models</artifactId>
		</dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
            <version>2.4</version>
        </dependency>

        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
            <version>1.131</version>
        </dependency>

        <dependency>
            <groupId>org.apache.avro</groupId>
            <artifactId>avro</artifactId>
            <version>1.7.7</version>
            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.avro</groupId>
            <artifactId>avro-ipc</artifactId>
            <version>1.7.7</version>
        </dependency>

		<dependency>
			<groupId>org.opencb.biodata</groupId>
			<artifactId>biodata-tools</artifactId>
			<version>${biodata.version}</version>
		</dependency>
		<dependency>
			<groupId>org.opencb.biodata</groupId>
			<artifactId>biodata-models</artifactId>
			<version>${biodata.version}</version>
		</dependency>
		<dependency>
			<groupId>org.opencb.biodata</groupId>
			<artifactId>biodata-formats</artifactId>
			<version>${biodata.version}</version>
		</dependency>

		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
		</dependency>
	</dependencies>

	<build>
		<plugins>

			<!-- <plugin> <artifactId>maven-assembly-plugin</artifactId> <configuration> 
				<archive> <manifest> <mainClass></mainClass> </manifest> </archive> <descriptorRefs> 
				<descriptorRef> jar-with-dependencies </descriptorRef> </descriptorRefs> 
				</configuration> <executions> <execution> <id>make-assembly</id> <phase>package</phase> 
				<goals> <goal>single</goal> </goals> </execution> </executions> </plugin> -->
		</plugins>
	</build>
</project>