hpg-bigdata
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- DependenciesDependencies
<dependency>
<groupId>org.opencb.hpg-bigdata</groupId>
<artifactId>hpg-bigdata</artifactId>
<version>1.0.0-beta4</version>
</dependency><?xml version="1.0" encoding="UTF-8"?>
<!--
~ Copyright 2015 OpenCB
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.opencb.hpg-bigdata</groupId>
<artifactId>hpg-bigdata</artifactId>
<version>1.0.0-beta4</version>
<packaging>pom</packaging>
<modules>
<module>hpg-bigdata-app</module>
<module>hpg-bigdata-core</module>
<module>hpg-bigdata-analysis</module>
</modules>
<name>HPG BigData project</name>
<description>HPG BigData project aims to provide tools for processing genomic big data in a Hadoop cluster</description>
<url>https://github.com/opencb/hpg-bigdata</url>
<properties>
<hpg.version>1.0.0-beta4</hpg.version>
<ga4gh.version>0.6.0a5</ga4gh.version>
<biodata.version>1.3.0</biodata.version>
<cellbase.version>4.5.3</cellbase.version>
<commons-lib.version>3.6.0</commons-lib.version>
<spark.version>2.2.0</spark.version>
<hadoop.version>2.7.3</hadoop.version>
<avro.version>1.7.7</avro.version>
<parquet.version>1.8.2</parquet.version>
<compileSource>1.8</compileSource>
</properties>
<scm>
<url>https://github.com/opencb/cellbase</url>
<connection>scm:git:git://github.com/opencb/cellbase.git</connection>
<developerConnection>scm:git:git@github.com:opencb/cellbase.git</developerConnection>
</scm>
<licenses>
<license>
<name>Apache License, Version 2</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<developers>
<developer>
<id>imedina</id>
<name>Nacho</name>
<email>igmecas@gmail.com</email>
</developer>
<developer>
<id>jtarraga</id>
<name>Joaquin</name>
<email>joaquintarraga@gmail.com</email>
</developer>
<developer>
<id>dapregi</id>
<name>Daniel</name>
<email>dperezgil89@gmail.com</email>
</developer>
<developer>
<id>jcoll</id>
<name>Jacobo</name>
<email>jacobo167@gmail.com</email>
</developer>
</developers>
<mailingLists>
<mailingList>
<name>OpenCB Mailing List</name>
<archive>https://groups.google.com/forum/#!forum/opencb</archive>
<post>opencb@googlegroups.com</post>
</mailingList>
</mailingLists>
<repositories>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
<snapshots>
<enabled>true</enabled>
<updatePolicy>daily</updatePolicy>
</snapshots>
</repository>
</repositories>
<dependencyManagement>
<dependencies>
<!-- Intra-module dependencies -->
<dependency>
<groupId>org.opencb.hpg-bigdata</groupId>
<artifactId>hpg-bigdata-core</artifactId>
<version>${hpg.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.hpg-bigdata</groupId>
<artifactId>hpg-bigdata-analysis</artifactId>
<version>${hpg.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.ga4gh</groupId>
<artifactId>ga4gh</artifactId>
<version>${ga4gh.version}</version>
</dependency>
<dependency>
<groupId>org.opencb.commons</groupId>
<artifactId>commons-lib</artifactId>
<version>${commons-lib.version}</version>
</dependency>
<!-- General dependencies -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
</dependencies>
</dependencyManagement>
<build>
<sourceDirectory>src/main/java</sourceDirectory>
<testSourceDirectory>src/test/java</testSourceDirectory>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.6.0</version>
<configuration>
<source>${compileSource}</source>
<target>${compileSource}</target>
<showDeprecation>true</showDeprecation>
<showWarnings>true</showWarnings>
<encoding>UTF-8</encoding>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>2.17</version>
<executions>
<execution>
<id>validate</id>
<phase>validate</phase>
<configuration>
<configLocation>checkstyle.xml</configLocation>
<excludes>org/opencb/hpg/bigdata/app/cli/options/LocalCliOptionsParser.java</excludes>
</configuration>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<failIfNoTests>false</failIfNoTests>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>default-config</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<properties>
<!-- General -->
<OSKAR.CELLBASE.REST.HOST>http://bioinfo.hpc.cam.ac.uk/cellbase/</OSKAR.CELLBASE.REST.HOST>
</properties>
</profile>
<profile>
<id>deploy</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.0.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.10.4</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
<configuration>
<additionalparam>-Xdoclint:none</additionalparam>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>deploy</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.5</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<distributionManagement>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
</distributionManagement>
</project>