Description

<dependency>
    <groupId>org.opencb.hpg-bigdata</groupId>
    <artifactId>hpg-bigdata-core</artifactId>
    <version>1.0.0-beta4</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<!--
  ~ Copyright 2015 OpenCB
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~     http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  -->

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <parent>
        <groupId>org.opencb.hpg-bigdata</groupId>
        <artifactId>hpg-bigdata</artifactId>
        <version>1.0.0-beta4</version>
        <relativePath>../pom.xml</relativePath>
    </parent>

    <artifactId>hpg-bigdata-core</artifactId>
    <version>${hpg.version}</version>

    <dependencies>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-tools</artifactId>
            <version>${biodata.version}</version>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
            <exclusions>
                <exclusion>
                    <artifactId>avro</artifactId>
                    <groupId>org.apache.avro</groupId>
                </exclusion>
                <exclusion>
                    <artifactId>jackson-databind</artifactId>
                    <groupId>com.fasterxml.jackson.core</groupId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.opencb.cellbase</groupId>
            <artifactId>cellbase-client</artifactId>
            <version>${cellbase.version}</version>
        </dependency>

        <dependency>
            <groupId>org.apache.spark</groupId>
            <artifactId>spark-sql_2.11</artifactId>
            <version>${spark.version}</version>
            <exclusions>
                <exclusion>
                    <artifactId>avro</artifactId>
                    <groupId>org.apache.avro</groupId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>com.databricks</groupId>
            <artifactId>spark-avro_2.11</artifactId>
            <version>3.2.0</version>
            <exclusions>
                <exclusion>
                    <artifactId>avro</artifactId>
                    <groupId>org.apache.avro</groupId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>org.apache.parquet</groupId>
            <artifactId>parquet-avro</artifactId>
            <version>${parquet.version}</version>
        </dependency>
        <dependency>
            <groupId>org.apache.parquet</groupId>
            <artifactId>parquet-hadoop</artifactId>
            <version>${parquet.version}</version>
        </dependency>
        <dependency>
            <groupId>com.google.protobuf</groupId>
            <artifactId>protobuf-java</artifactId>
            <version>3.1.0</version>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
        </dependency>
    </dependencies>

    <build>
        <sourceDirectory>src/main/java</sourceDirectory>
        <testSourceDirectory>src/test/java</testSourceDirectory>

        <resources>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
                <includes>
                    <include>configuration.yml</include>
                </includes>
            </resource>
        </resources>
    </build>
</project>