Description

<dependency>
    <groupId>org.opencb.cellbase</groupId>
    <artifactId>cellbase-server</artifactId>
    <version>7.0.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <groupId>org.opencb.cellbase</groupId>
        <artifactId>cellbase</artifactId>
        <version>7.0.0</version>
        <relativePath>../pom.xml</relativePath>
    </parent>

    <artifactId>cellbase-server</artifactId>
    <packaging>war</packaging>

    <dependencies>
        <dependency>
            <groupId>org.opencb.cellbase</groupId>
            <artifactId>cellbase-lib</artifactId>
            <version>${project.parent.version}</version>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-formats</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-datastore-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.cellbase</groupId>
            <artifactId>cellbase-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-models</artifactId>
        </dependency>
        <!-- General dependencies -->
        <dependency>
            <groupId>com.fasterxml.jackson.module</groupId>
            <artifactId>jackson-module-jsonSchema</artifactId>
        </dependency>
        <dependency>
            <groupId>javax.servlet</groupId>
            <artifactId>javax.servlet-api</artifactId>
            <scope>provided</scope>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-server</artifactId>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-util-ajax</artifactId>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-webapp</artifactId>
        </dependency>
        <dependency>
            <groupId>io.swagger</groupId>
            <artifactId>swagger-annotations</artifactId>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-collections4</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-annotations</artifactId>
        </dependency>
        <dependency>
            <groupId>org.mongodb</groupId>
            <artifactId>bson</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-lang</groupId>
            <artifactId>commons-lang</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
        </dependency>
        <dependency>
            <groupId>jakarta.ws.rs</groupId>
            <artifactId>jakarta.ws.rs-api</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
        </dependency>

        <!--TODO Review -->
        <dependency>
            <groupId>io.swagger</groupId>
            <artifactId>swagger-jersey2-jaxrs</artifactId>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.inject</groupId>
            <artifactId>jersey-hk2</artifactId>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.media</groupId>
            <artifactId>jersey-media-json-jackson</artifactId>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.containers</groupId>
            <artifactId>jersey-container-servlet</artifactId>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.containers</groupId>
            <artifactId>jersey-container-servlet-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.glassfish.jersey.media</groupId>
            <artifactId>jersey-media-multipart</artifactId>
        </dependency>

    </dependencies>

    <build>
        <sourceDirectory>src/main/java</sourceDirectory>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-war-plugin</artifactId>
                <version>3.2.3</version>
                <configuration>
                    <warName>${CELLBASE.WAR.NAME}</warName>
                    <webResources>
                        <resource>
                            <directory>src/main/webapp/WEB-INF/</directory>
                            <targetPath>WEB-INF</targetPath>
                            <filtering>true</filtering>
                        </resource>
                    </webResources>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <executions>
                    <execution>
                        <id>make-a-jar</id>
                        <phase>compile</phase>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>


            <!-- Plugin to install the JAR -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-install-plugin</artifactId>
                <version>3.1.1</version>
                <executions>
                    <execution>
                        <id>install-jar</id>
                        <phase>install</phase>
                        <goals>
                            <goal>install-file</goal>
                        </goals>
                        <configuration>
                            <packaging>jar</packaging>
                            <groupId>${project.groupId}</groupId>
                            <artifactId>${project.artifactId}</artifactId>
                            <version>${project.version}</version>
                            <file>
                                ${project.build.directory}/${project.artifactId}-${project.version}.jar
                            </file>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
</project>