Description

<dependency>
    <groupId>org.opencb.cellbase</groupId>
    <artifactId>cellbase-lib</artifactId>
    <version>7.0.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <groupId>org.opencb.cellbase</groupId>
        <artifactId>cellbase</artifactId>
        <version>7.0.0</version>
        <relativePath>../pom.xml</relativePath>
    </parent>

    <artifactId>cellbase-lib</artifactId>
    <packaging>jar</packaging>

    <dependencies>
        <dependency>
            <groupId>org.opencb.cellbase</groupId>
            <artifactId>cellbase-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-datastore-mongodb</artifactId>
            <exclusions>
                <exclusion>
                    <artifactId>slf4j-simple</artifactId>
                    <groupId>org.slf4j</groupId>
                </exclusion>
            </exclusions>
         </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-formats</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-datastore-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-tools</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-models</artifactId>
        </dependency>

        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi-ooxml</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-annotations</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-lang</groupId>
            <artifactId>commons-lang</artifactId>
        </dependency>
        <dependency>
            <groupId>org.mongodb</groupId>
            <artifactId>mongodb-driver-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
        </dependency>
        <dependency>
            <groupId>jakarta.ws.rs</groupId>
            <artifactId>jakarta.ws.rs-api</artifactId>
        </dependency>
        <dependency>
            <groupId>org.mongodb</groupId>
            <artifactId>mongodb-driver-sync</artifactId>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-io</groupId>
            <artifactId>commons-io</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-core</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-collections4</artifactId>
        </dependency>
        <dependency>
            <groupId>org.rocksdb</groupId>
            <artifactId>rocksdbjni</artifactId>
        </dependency>
        <dependency>
            <groupId>com.beust</groupId>
            <artifactId>jcommander</artifactId>
        </dependency>
       <dependency>
            <groupId>commons-codec</groupId>
            <artifactId>commons-codec</artifactId>
        </dependency>
        <dependency>
            <groupId>org.mongodb</groupId>
            <artifactId>bson</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>jakarta.xml.bind</groupId>
            <artifactId>jakarta.xml.bind-api</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi</artifactId>
        </dependency>
        <dependency>
            <groupId>com.github.samtools</groupId>
            <artifactId>htsjdk</artifactId>
        </dependency>
        <dependency>
            <groupId>org.codehaus.jackson</groupId>
            <artifactId>jackson-mapper-asl</artifactId>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-api</artifactId>
        </dependency>
        <dependency>
            <groupId>org.eclipse.jetty</groupId>
            <artifactId>jetty-util-ajax</artifactId>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-core</artifactId>
            <scope>test</scope>
        </dependency>

        <!--TODO Review -->
         <dependency>
            <groupId>org.glassfish.jersey.core</groupId>
            <artifactId>jersey-client</artifactId>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-all</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.platform</groupId>
            <artifactId>junit-platform-engine</artifactId>
            <scope>test</scope>
        </dependency>

    </dependencies>

    <build>
        <testResources>
            <testResource>
                <directory>src/test/resources</directory>
                <excludes>
                    <exclude>configuration.test.yaml</exclude>
                </excludes>
            </testResource>
            <testResource>
                <directory>src/test/resources</directory>
                <includes>
                    <include>configuration.test.yaml</include>
                </includes>
                <filtering>true</filtering>
            </testResource>
        </testResources>
    </build>
</project>