Description

<dependency>
    <groupId>org.opencb.cellbase</groupId>
    <artifactId>cellbase-core</artifactId>
    <version>7.0.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <groupId>org.opencb.cellbase</groupId>
        <artifactId>cellbase</artifactId>
        <version>7.0.0</version>
        <relativePath>../pom.xml</relativePath>
    </parent>

    <artifactId>cellbase-core</artifactId>
    <packaging>jar</packaging>

    <dependencies>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-tools</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-lib</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-models</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.biodata</groupId>
            <artifactId>biodata-formats</artifactId>
        </dependency>
        <dependency>
            <groupId>org.opencb.commons</groupId>
            <artifactId>commons-datastore-core</artifactId>
        </dependency>

        <!-- General dependencies -->
        <dependency>
            <groupId>com.fasterxml.jackson.dataformat</groupId>
            <artifactId>jackson-dataformat-yaml</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-core</artifactId>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-api</artifactId>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-impl</artifactId>
        </dependency>
        <dependency>
            <groupId>com.google.guava</groupId>
            <artifactId>guava</artifactId>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-annotations</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-collections4</artifactId>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-lang3</artifactId>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
        </dependency>
        <dependency>
            <groupId>commons-lang</groupId>
            <artifactId>commons-lang</artifactId>
        </dependency>

        <!-- Test dependencies -->
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-core</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <scope>test</scope>
        </dependency>

        <!--TODO Review -->
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-all</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-slf4j-impl</artifactId>
        </dependency>
        <dependency>
            <groupId>org.junit.platform</groupId>
            <artifactId>junit-platform-engine</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>io.jsonwebtoken</groupId>
            <artifactId>jjwt-jackson</artifactId>
        </dependency>
    </dependencies>

    <build>
        <resources>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
                <includes>
                    <include>configuration.json</include>
                    <include>configuration.yml</include>
                    <include>git.properties</include>
                    <include>log4j2.xml</include>
                    <include>log4j2.file.xml</include>
                    <include>log4j2.console.xml</include>
                </includes>
            </resource>
        </resources>

        <extensions>
            <extension>
                <groupId>kr.motd.maven</groupId>
                <artifactId>os-maven-plugin</artifactId>
                <version>1.7.1</version>
            </extension>
        </extensions>
        <plugins>
            <plugin>
                <groupId>pl.project13.maven</groupId>
                <artifactId>git-commit-id-plugin</artifactId>
                <version>2.2.0</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>revision</goal>
                        </goals>
                    </execution>
                </executions>

                <configuration>
                    <!-- this is false by default, forces the plugin to generate the git.properties file -->
                    <generateGitPropertiesFile>true</generateGitPropertiesFile>

                    <!-- The path for the to be generated properties file, it's relative to ${project.basedir} -->
                    <generateGitPropertiesFilename>src/main/resources/git.properties</generateGitPropertiesFilename>
                    <gitDescribe>

                        <!-- don't generate the describe property -->
                        <skip>false</skip>

                        <!--
                            if no tag was found "near" this commit, just print the commit's id instead,
                            helpful when you always expect this field to be not-empty
                        -->
                        <always>false</always>
                        <!--
                             how many chars should be displayed as the commit object id?
                             7 is git's default,
                             0 has a special meaning (see end of this README.md),
                             and 40 is the maximum value here
                        -->
                        <abbrev>7</abbrev>

                        <!-- when the build is triggered while the repo is in "dirty state", append this suffix -->
                        <dirty>-DEV</dirty>

                        <!-- Only consider tags matching the given pattern. This can be used to avoid leaking private tags from the repository. -->
                        <match>*</match>

                        <!--
                             always print using the "tag-commits_from_tag-g_commit_id-maybe_dirty" format, even if "on" a tag.
                             The distance will always be 0 if you're "on" the tag.
                        -->
                        <forceLongFormat>false</forceLongFormat>
                    </gitDescribe>
                </configuration>
            </plugin>
        </plugins>
    </build>
</project>