Description

<dependency>
    <groupId>org.monarchinitiative.fenominal</groupId>
    <artifactId>fenominal</artifactId>
    <version>0.7.11</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.monarchinitiative.fenominal</groupId>
    <artifactId>fenominal</artifactId>
    <version>0.7.11</version>
    <parent>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-starter-parent</artifactId>
        <version>3.2.0</version>
    </parent>
    <modules>
        <module>fenominal-core</module>
        <module>fenominal-cli</module>
    </modules>
    <packaging>pom</packaging>

    <name>Fenominal</name>
    <url>https://github.com/monarch-initiative/fenominal</url>

    <licenses>
        <license>
            <name>GNU General Public License version 3</name>
            <url>https://opensource.org/license/gpl-3-0</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Tudor Groza</name>
            <email>tudor@ebi.ac.uk</email>
        </developer>
        <developer>
            <name>Peter N Robinson</name>
            <email>peter.robinson@jax.org</email>
        </developer>
    </developers>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <java.version>17</java.version>
        <maven.compiler.source>${java.version}</maven.compiler.source>
        <maven.compiler.target>${java.version}</maven.compiler.target>
        <phenol.version>2.0.5</phenol.version>
        <slf4j.version>2.0.7</slf4j.version>
    </properties>

    <prerequisites>
        <maven>3.8.0</maven>
    </prerequisites>

    <scm>
        <connection>scm:git:git@github.com:monarch-initiative/fenominal.git</connection>
        <developerConnection>scm:git:git@github.com:monarch-initiative/fenominal.git</developerConnection>
        <url>https://github.com/monarch-initiative/fenominal</url>
        <tag>v@{project.version}</tag>
    </scm>

    <distributionManagement>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
    </distributionManagement>

    <inceptionYear>2021</inceptionYear>
    <description>TBLAT Named entity recognition for Human Phenotype Ontology</description>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>org.monarchinitiative.phenol</groupId>
                <artifactId>phenol-core</artifactId>
                <version>${phenol.version}</version>
            </dependency>
            <dependency>
                <groupId>org.monarchinitiative.phenol</groupId>
                <artifactId>phenol-io</artifactId>
                <version>${phenol.version}</version>
            </dependency>

            <dependency>
                <groupId>info.picocli</groupId>
                <artifactId>picocli</artifactId>
                <version>4.5.2</version>
            </dependency>
            <dependency>
                <groupId>org.monarchinitiative.biodownload</groupId>
                <artifactId>biodownload</artifactId>
                <version>1.0.1</version>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-api</artifactId>
                <version>${slf4j.version}</version>
            </dependency>

            <!-- testing -->
            <dependency>
                <groupId>org.junit.jupiter</groupId>
                <artifactId>junit-jupiter</artifactId>
                <version>5.9.2</version>
                <scope>test</scope>
            </dependency>
            <dependency>
                <groupId>org.slf4j</groupId>
                <artifactId>slf4j-simple</artifactId>
                <scope>test</scope>
                <version>${slf4j.version}</version>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <!-- Dependencies used in all modules  -->
    <dependencies>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter</artifactId>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-simple</artifactId>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.12.1</version>
                    <configuration>
                        <source>${java.version}</source>
                        <target>${java.version}</target>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-surefire-plugin</artifactId>
                    <version>3.2.3</version>
                        <configuration>
                            <useModulePath>false</useModulePath>  <!-- tests use classpath -->
                        </configuration>
                </plugin>
            </plugins>
        </pluginManagement>

        <!-- The plugins used in all modules -->
        <plugins>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>versions-maven-plugin</artifactId>
                <version>2.8.1</version>
                <configuration>
                    <generateBackupPoms>false</generateBackupPoms>
                </configuration>
            </plugin>
        </plugins>
    </build>

    <profiles>
        <profile>
            <!-- This profile should be activated only during local install or deploying a release. -->
            <!-- The GPG plugin is used to sign the artifacts. Note that you need to set up your GPG key first. -->
            <!-- Activate the profile by running e.g. `./mvnw -Prelease clean deploy` -->
            <id>release</id>
            <build>
                <pluginManagement>
                    <plugins>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-source-plugin</artifactId>
                            <version>2.2.1</version>
                            <executions>
                                <execution>
                                    <id>attach-sources</id>
                                    <goals>
                                        <goal>jar-no-fork</goal>
                                    </goals>
                                </execution>
                            </executions>
                        </plugin>

                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-javadoc-plugin</artifactId>
                            <version>3.3.1</version>
                            <configuration>
                                <javadocExecutable>${java.home}/bin/javadoc</javadocExecutable>
                                <doclint>none</doclint>
                                <quiet>true</quiet>
                            </configuration>
                            <executions>
                                <execution>
                                    <!-- Prepare Javadoc JARs for Maven Central. -->
                                    <id>attach-javadocs</id>
                                    <goals>
                                        <goal>jar</goal>
                                    </goals>
                                </execution>
                            </executions>
                        </plugin>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-release-plugin</artifactId>
                            <version>3.0.0-M5</version>
                        </plugin>
                        <plugin>
                            <!-- override version of GPG plugin to use new GPG signing features -->
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-gpg-plugin</artifactId>
                            <version>1.6</version>
                            <executions>
                                <execution>
                                    <id>sign-artifacts</id>
                                    <phase>verify</phase>
                                    <goals>
                                        <goal>sign</goal>
                                    </goals>
                                </execution>
                            </executions>
                        </plugin>
                        <plugin>
                            <groupId>org.apache.maven.plugins</groupId>
                            <artifactId>maven-deploy-plugin</artifactId>
                            <version>3.0.0-M2</version>
                        </plugin>
                    </plugins>
                </pluginManagement>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>
</project>