Description

<dependency>
    <groupId>org.lifs-tools</groupId>
    <artifactId>jmzqc</artifactId>
    <version>1.0.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>org.lifs-tools</groupId>
    <artifactId>jmzqc</artifactId>
    <version>1.0.0</version>
    <packaging>jar</packaging>
    <name>jmzQC</name>
    <description>jmzQC is the Java reference implementation to read, create, validate and write the mzQC format.</description>
    <url>https://github.com/MS-Quality-hub/jmzqc</url>
    <organization>
        <name>MS Quality Hub</name>
        <url>https://github.com/MS-Quality-hub/</url>
    </organization>
    <licenses>
        <license>
            <name>The Apache License, Version 2.0</name>
            <url>https://www.apache.org/licenses/LICENSE-2.0.txt</url>
            <distribution>repo</distribution>
        </license>
    </licenses>
    <developers>
        <developer>
            <name>Nils Hoffmann</name>
            <email>nils.hoffmann@cebitec.uni-bielefeld.de</email>
            <organization>CeBiTec, Uni Bielefeld</organization>
            <organizationUrl>https://www.cebitec.uni-bielefeld.de/</organizationUrl>
            <roles>
                <role>developer</role>
            </roles>
            <timezone>Europe/Berlin</timezone>
        </developer>
    </developers>
    <scm>
        <connection>scm:git:git@github.com:MS-Quality-hub/jmzqc.git</connection>
        <developerConnection>scm:git:git@github.com:MS-Quality-hub/jmzqc.git</developerConnection>
        <url>https://github.com/MS-Quality-hub/jmzqc</url>
    </scm>
    <issueManagement>
        <system>GitHub</system>
        <url>https://github.com/MS-Quality-hub/jmzqc/issues</url>
    </issueManagement>
    <distributionManagement>
        <site>
            <id>jmzqc.website</id>
            <name>JmzQC Website</name>
            <url>https://MS-Quality-hub.github.io/jmzqc/${project.version}</url>
        </site>
    </distributionManagement>

    <dependencies>
        <dependency>
            <groupId>javax.annotation</groupId>
            <artifactId>javax.annotation-api</artifactId>
            <version>1.3.2</version>
        </dependency>
        <dependency>
            <groupId>javax.validation</groupId>
            <artifactId>validation-api</artifactId>
            <version>2.0.1.Final</version>
        </dependency>
        <dependency>
            <groupId>com.google.code.findbugs</groupId>
            <artifactId>jsr305</artifactId>
            <version>3.0.2</version>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <version>5.10.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-params</artifactId>
            <version>5.10.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <version>5.10.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-annotations</artifactId>
            <version>2.16.1</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
            <version>2.16.1</version>
            <type>jar</type>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.datatype</groupId>
            <artifactId>jackson-datatype-jsr310</artifactId>
            <version>2.15.2</version>
        </dependency>
        <dependency>
            <groupId>com.networknt</groupId>
            <artifactId>json-schema-validator</artifactId>
            <version>1.0.72</version>
        </dependency>
        <dependency>
            <groupId>commons-cli</groupId>
            <artifactId>commons-cli</artifactId>
            <version>1.6.0</version>
        </dependency>
    </dependencies>
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
        <maven.compiler.source>17</maven.compiler.source>
        <maven.compiler.target>17</maven.compiler.target>
        <maven.compiler.release>17</maven.compiler.release>
        <java.version>17</java.version>
        <github.global.server>github-site</github.global.server>
    </properties>
    <build>
        <resources>
            <resource>
                <directory>src/main/resources</directory>
                <filtering>true</filtering>
            </resource>
        </resources>
        <pluginManagement>
            <plugins>
                <plugin>
                    <groupId>org.codehaus.mojo</groupId>
                    <artifactId>buildnumber-maven-plugin</artifactId>
                    <version>3.2.0</version>
                    <executions>
                        <execution>
                            <phase>validate</phase>
                            <goals>
                                <goal>create</goal>
                            </goals>
                        </execution>
                    </executions>
                    <configuration>
                        <doCheck>false</doCheck>
                        <doUpdate>false</doUpdate>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-install-plugin</artifactId>
                    <version>3.1.1</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-deploy-plugin</artifactId>
                    <version>3.1.1</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-dependency-plugin</artifactId>
                    <version>3.5.0</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-jar-plugin</artifactId>
                    <version>3.3.0</version>
                    <configuration>
                        <archive>
                            <manifest>
                                <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                            </manifest>
                            <manifestEntries>
                                <Implementation-Build>${buildNumber}</Implementation-Build>
                                <Commit>${buildNumber}</Commit>
                                <Branch>${scmBranch}</Branch>
                                <Build-Time>${maven.build.timestamp}</Build-Time>
                            </manifestEntries>
                        </archive>
                    </configuration>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-assembly-plugin</artifactId>
                    <version>3.6.0</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-javadoc-plugin</artifactId>
                    <version>3.5.0</version>
                    <executions>
                        <execution>
                            <id>attach-javadocs</id>
                            <goals>
                                <goal>jar</goal>
                            </goals>
                            <configuration>
                                <additionalparam>-Xdoclint:none</additionalparam>
                            </configuration>
                        </execution>
                        <execution>
                            <goals>
                                <goal>javadoc</goal>
                            </goals>
                            <phase>site</phase>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <version>3.11.0</version>
                    <configuration>
                        <source>${java.version}</source>
                        <target>${java.version}</target>
                    </configuration>
                </plugin>
                <plugin>
                    <artifactId>maven-surefire-plugin</artifactId>
                    <version>3.1.2</version>
                    <configuration>
                        <redirectTestOutputToFile>true</redirectTestOutputToFile>
                        <parallel>classes</parallel>
                        <threadCount>2</threadCount>
                        <trimStackTrace>false</trimStackTrace>
                        <workingDirectory>${project.build.directory}/surefire-files</workingDirectory>
                    </configuration>
                </plugin>
                <plugin>
                    <artifactId>maven-failsafe-plugin</artifactId>
                    <version>3.1.0</version>
                    <executions>
                        <execution>
                            <configuration>
                                <redirectTestOutputToFile>true</redirectTestOutputToFile>
                                <parallel>classes</parallel>
                                <threadCount>2</threadCount>
                                <trimStackTrace>true</trimStackTrace>
                                <workingDirectory>${project.build.directory}/failsafe-files</workingDirectory>
                            </configuration>
                            <goals>
                                <goal>integration-test</goal>
                                <goal>verify</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-shade-plugin</artifactId>
                    <version>3.4.1</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-source-plugin</artifactId>
                    <version>3.3.0</version>
                    <executions>
                        <execution>
                            <id>attach-sources</id>
                            <phase>package</phase>
                            <goals>
                                <goal>jar-no-fork</goal>
                            </goals>
                        </execution>
                    </executions>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-site-plugin</artifactId>
                    <version>3.12.1</version>
                    <dependencies>
                        <dependency>
                            <groupId>org.asciidoctor</groupId>
                            <artifactId>asciidoctor-maven-plugin</artifactId>
                            <version>2.2.2</version>
                        </dependency>
                    </dependencies>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-resources-plugin</artifactId>
                    <version>3.3.1</version>
                </plugin>
                <plugin>
                    <groupId>org.apache.maven.plugins</groupId>
                    <artifactId>maven-antrun-plugin</artifactId>
                    <version>3.1.0</version>
                </plugin>
            </plugins>
        </pluginManagement>
        <plugins>
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>buildnumber-maven-plugin</artifactId>
            </plugin>
            <plugin>
                <artifactId>maven-antrun-plugin</artifactId>
                <version>3.1.0</version>
                <executions>
                    <execution>
                        <phase>generate-resources</phase>
                        <configuration>
                            <target>
                                <copy file="${basedir}/README.adoc" tofile="${basedir}/src/site/asciidoc/index.adoc" />
                            </target>
                        </configuration>
                        <goals>
                            <goal>run</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.11.0</version>
                <configuration>
                    <release>${java.version}</release>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.springframework.boot</groupId>
                <artifactId>spring-boot-maven-plugin</artifactId>
                <version>2.7.18</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>repackage</goal>
                        </goals>
                        <configuration>
                            <classifier>spring-boot</classifier>
                            <mainClass>
                                org.lifstools.jmzqc.CmdLineParser
                            </mainClass>
                            <classifier>cli</classifier>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
    <reporting>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-site-plugin</artifactId>
                <version>3.12.1</version>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-project-info-reports-plugin</artifactId>
                <version>3.4.5</version>
                <reportSets>
                    <reportSet>
                        <reports>
                            <report>index</report>
                            <report>summary</report>
                            <report>modules</report>
                            <report>dependencies</report>
                            <report>dependency-convergence</report>
                            <report>dependency-info</report>
                            <report>dependency-management</report>
                            <report>distribution-management</report>
                            <report>team</report>
                            <report>mailing-lists</report>
                            <report>ci-management</report>
                            <report>issue-management</report>
                            <report>plugin-management</report>
                            <report>plugins</report>
                            <report>licenses</report>
                            <report>scm</report>
                        </reports>
                    </reportSet>
                </reportSets>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-report-plugin</artifactId>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <configuration>
                    <source>${java.version}</source>
                    <linksource>true</linksource>
                    <docfilessubdirs>true</docfilessubdirs>
                </configuration>
                <reportSets>
                    <reportSet>
                        <reports>
                            <report>javadoc</report>
                        </reports>
                    </reportSet>
                    <reportSet>
                        <id>aggregate</id>
                        <inherited>false</inherited>
                        <reports>
                            <report>aggregate</report>
                        </reports>
                    </reportSet>
                </reportSets>
            </plugin>
        </plugins>
    </reporting>
    <profiles>
        <profile>
            <id>ossrh</id>
            <distributionManagement>
                <snapshotRepository>
                    <id>ossrh</id>
                    <url>https://s01.oss.sonatype.org/content/repositories/snapshots</url>
                </snapshotRepository>
                <repository>
                    <id>ossrh</id>
                    <url>https://s01.oss.sonatype.org/service/local/staging/deploy/maven2/</url>
                </repository>
            </distributionManagement>
        </profile>
        <profile>
            <id>ossrh-snapshot</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                        <executions>
                            <execution>
                                <id>attach-sources</id>
                                <goals>
                                    <goal>jar-no-fork</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                        <executions>
                            <execution>
                                <id>attach-javadocs</id>
                                <goals>
                                    <goal>jar</goal>
                                </goals>
                                <configuration>
                                    <detectJavaApiLink>false</detectJavaApiLink>
                                    <additionalparam>-Xdoclint:none</additionalparam>
                                    <docfilessubdirs>true</docfilessubdirs>
                                </configuration>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
        <profile>
            <id>ossrh-release</id>
            <properties>
                <gpg.executable>${gpg.executable}</gpg.executable>
                <gpg.keyname>${gpg.keyname}</gpg.keyname>
                <gpg.passphrase>${gpg.passphrase}</gpg.passphrase>
            </properties>
            <activation>
                <property>
                    <name>performRelease</name>
                    <value>true</value>
                </property>
            </activation>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                        <executions>
                            <execution>
                                <id>attach-sources</id>
                                <goals>
                                    <goal>jar-no-fork</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                        <executions>
                            <execution>
                                <id>attach-javadocs</id>
                                <goals>
                                    <goal>jar</goal>
                                </goals>
                                <configuration>
                                    <detectJavaApiLink>false</detectJavaApiLink>
                                    <additionalparam>-Xdoclint:none</additionalparam>
                                    <docfilessubdirs>true</docfilessubdirs>
                                </configuration>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                        <version>3.0.1</version>
                        <executions>
                            <execution>
                                <id>sign-artifacts</id>
                                <phase>verify</phase>
                                <goals>
                                    <goal>sign</goal>
                                </goals>
                                <configuration>
                                    <keyname>${gpg.keyname}</keyname>
                                    <passphraseServerId>${gpg.keyname}</passphraseServerId>
                                </configuration>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.sonatype.plugins</groupId>
                        <artifactId>nexus-staging-maven-plugin</artifactId>
                        <version>1.6.13</version>
                        <extensions>true</extensions>
                        <configuration>
                            <serverId>ossrh</serverId>
                            <nexusUrl>https://s01.oss.sonatype.org/</nexusUrl>
                            <autoReleaseAfterClose>false</autoReleaseAfterClose>
                        </configuration>
                    </plugin>
                </plugins>
            </build>
        </profile>
        <profile>
            <id>site-deploy</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>com.github.github</groupId>
                        <artifactId>site-maven-plugin</artifactId>
                        <version>0.12</version>
                        <configuration>
                            <message>Creating site for ${project.version}</message>
                            <repositoryOwner>MS-Quality-hub</repositoryOwner>
                            <repositoryName>jmzqc</repositoryName>
                        </configuration>
                        <executions>
                            <execution>
                                <goals>
                                    <goal>site</goal>
                                </goals>
                                <phase>site</phase>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>
</project>