Description

<dependency>
    <groupId>org.erasmusmc.data-mining</groupId>
    <artifactId>data-mining</artifactId>
    <version>1.3</version>
</dependency>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">

    <modelVersion>4.0.0</modelVersion>

    <groupId>org.erasmusmc.data-mining</groupId>
    <artifactId>data-mining</artifactId>
    <packaging>pom</packaging>
    <version>1.3</version>

    <name>Data Mining Project Set</name>
    <inceptionYear>2009</inceptionYear>
    <url>https://trac.nbic.nl/data-mining/</url>
    <description>The data-mining project contains Peregrine and several
        supporting modules, e.g. for ontologies and datasets. Peregrine is an
        indexing engine or tagger: a piece of software that can be used to
        recognize concepts in human readable text, based on a database
        (thesaurus) of known terms. Multi-word terms are correctly recognized.
        If terms can represent multiple concepts, Peregrine will attempt to
        disambiguate them.
    </description>

    <organization>
        <name>ErasmusMC</name>
        <url>http://www.erasmusmc.nl/</url>
    </organization>

    <licenses>
        <license>
            <name>AGPLv3 License</name>
            <url>http://www.gnu.org/licenses/agpl.html</url>
        </license>
    </licenses>

    <scm>
        <connection>scm:svn:https://trac.nbic.nl/svn/data-mining/tags/data-mining-1.3</connection>
        <developerConnection>scm:svn:https://trac.nbic.nl/svn/data-mining/tags/data-mining-1.3</developerConnection>
        <url>https://trac.nbic.nl/data-mining/browser/tags/data-mining-1.3</url>
    </scm>

    <developers>
        <developer>
            <id>dkatsubo</id>
            <name>Dmitry Katsubo</name>
            <email>dmitry.katsubo@nbic.nl</email>
            <url>http://www.linkedin.com/in/dkatsubo</url>
            <organization>NBIC</organization>
            <organizationUrl>http://www.nbic.nl/</organizationUrl>
            <roles>
                <role>architect</role>
                <role>developer</role>
            </roles>
        </developer>
        <developer>
            <id>mschuemie</id>
            <name>Martijn Schuemie</name>
            <email>m.schuemie@erasmusmc.nl</email>
            <url>http://schuemie.net/</url>
            <organization>ErasmusMC</organization>
            <organizationUrl>http://www.erasmusmc.nl/</organizationUrl>
            <roles>
                <role>architect</role>
                <role>developer</role>
            </roles>
        </developer>
    </developers>

    <contributors>
        <contributor>
            <name>Bharat Singh</name>
            <email>bharat.singh@nbic.nl</email>
            <url>https://wiki.nbic.nl/index.php/User:Bharat_Singh</url>
            <organization>NBIC</organization>
            <organizationUrl>http://www.nbic.nl/</organizationUrl>
            <roles>
                <role>integrator</role>
            </roles>
        </contributor>
        <contributor>
            <name>Leon Mei</name>
            <email>hailiang.mei@nbic.nl</email>
            <url>https://wiki.nbic.nl/index.php/User:Leon</url>
            <organization>NBIC</organization>
            <organizationUrl>http://www.nbic.nl/</organizationUrl>
            <roles>
                <role>integrator</role>
            </roles>
        </contributor>
        <contributor>
            <name>David van Enckevort</name>
            <email>david.van.enckevort@dtls.nl</email>
            <roles>
                <role>maintainer</role>
            </roles>
            <organization>Dutch Techcentre for Life Sciences</organization>
            <organizationUrl>http://www.dtls.nl/</organizationUrl>
        </contributor>
    </contributors>
    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>

    <dependencyManagement>
        <dependencies>
            <dependency>
                <groupId>commons-lang</groupId>
                <artifactId>commons-lang</artifactId>
                <version>${commons.lang.version}</version>
            </dependency>
            <dependency>
                <groupId>commons-io</groupId>
                <artifactId>commons-io</artifactId>
                <version>${commons.io.version}</version>
            </dependency>
            <dependency>
                <groupId>commons-collections</groupId>
                <artifactId>commons-collections</artifactId>
                <version>${commons.collections.version}</version>
            </dependency>
            <dependency>
                <groupId>commons-dbcp</groupId>
                <artifactId>commons-dbcp</artifactId>
                <version>${commons.dbcp.version}</version>
            </dependency>
            <dependency>
                <groupId>org.apache.commons</groupId>
                <artifactId>commons-compress</artifactId>
                <version>${commons.compress.version}</version>
            </dependency>
            <dependency>
                <groupId>commons-fileupload</groupId>
                <artifactId>commons-fileupload</artifactId>
                <version>${commons.fileupload.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-core</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-context</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-context-support</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-web</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-jdbc</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-tx</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-aop</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>org.springframework</groupId>
                <artifactId>spring-test</artifactId>
                <version>${spring.version}</version>
            </dependency>
            <dependency>
                <groupId>mysql</groupId>
                <artifactId>mysql-connector-java</artifactId>
                <version>${mysql.connector.version}</version>
            </dependency>
            <dependency>
                <groupId>org.easymock</groupId>
                <artifactId>easymock</artifactId>
                <version>${easymock.version}</version>
            </dependency>
        </dependencies>
    </dependencyManagement>

    <dependencies>
        <dependency>
            <groupId>commons-logging</groupId>
            <artifactId>commons-logging</artifactId>
            <version>${commons.logging.version}</version>
        </dependency>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>${junit.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>${log4j.version}</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <encoding>${project.build.sourceEncoding}</encoding>
                </configuration>
                <version>${maven.compiler.plugin.version}</version>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-resources-plugin</artifactId>
                <configuration>
                    <encoding>${project.build.sourceEncoding}</encoding>
                </configuration>
                <version>${maven.resource.plugin.version}</version>
            </plugin>
            <plugin>
                <groupId>org.jacoco</groupId>
                <artifactId>jacoco-maven-plugin</artifactId>
                <version>${jacoco-maven-plugin.version}</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>prepare-agent</goal>
                        </goals>
                    </execution>
                    <execution>
                        <id>report</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <inherited>false</inherited>
                <groupId>com.mycila.maven-license-plugin</groupId>
                <artifactId>maven-license-plugin</artifactId>
                <version>1.9.0</version>
                <configuration>
                    <header>${basedir}/header.txt</header>
                    <failIfMissing>true</failIfMissing>
                    <aggregate>true</aggregate>
                    <strictCheck>true</strictCheck>
                    <properties>
                        <owner>Erasmus Medical Center</owner>
                        <year>${project.inceptionYear}</year>
                        <email />
                    </properties>
                    <excludes>
                        <exclude>LICENSE</exclude>
                        <exclude>**/src/test/resources/**</exclude>
                        <exclude>**/workshop/**</exclude>
                        <exclude>**/README</exclude>
                        <exclude>**/*.txt</exclude>
                        <exclude>**/nb-configuration.xml</exclude>
                        <exclude>**/*.properties</exclude>
                        <exclude>**/*.xml</exclude>
                        <exclude>**/*.sql</exclude>
                        <exclude>**/*.bat</exclude>
                        <exclude>**/*.sh</exclude>
                        <exclude>**/*.xjb</exclude>
                        <exclude>**/*.xsd</exclude>
                        <exclude>**/*.dtd</exclude>
                        <exclude>**/*.cat</exclude>
                    </excludes>
                </configuration>
                <executions>
                    <execution>
                        <id>check-headers</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>check</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>2.9.1</version>
                <configuration>
                    <!-- Exclude the generated ontology code, because it fails
                    javadoc compilation, because of unencoded entities in the
                    class javadoc comment specifying the schema fragment that
                    represents the class.
                    -->
                    <excludePackageNames>org.erasmusmc.data_mining.ontology.common</excludePackageNames>
                </configuration>
                <executions>
                    <execution>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>2.2.1</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <goals>
                            <goal>jar-no-fork</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-gpg-plugin</artifactId>
                <version>1.5</version>
                <configuration>
                    <gpgArguments>
                        <arg>--batch</arg>
                    </gpgArguments>
                </configuration>
                <executions>
                    <execution>
                        <id>sign-artifacts</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>sign</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>
        <pluginManagement>
            <plugins>
                <!-- This is needed then you want to checkout the source code without having dependencies to command-line tool: -->
                <plugin>
                    <artifactId>maven-scm-plugin</artifactId>
                    <dependencies>
                        <dependency>
                            <groupId>com.google.scm.svnjava</groupId>
                            <artifactId>maven-scm-provider-svnjava</artifactId>
                            <version>${maven.scm.provider.svnjava.version}</version>
                        </dependency>
                    </dependencies>
                    <version>${maven.scm.plugin.version}</version>
                </plugin>
                <!-- Build everything:
                    mvn -o clean install package
                    mvn dependency:tree
                -->
                <!-- Global settings for maven-compiler-plugin: -->
                <plugin>
                    <inherited>true</inherited>
                    <artifactId>maven-compiler-plugin</artifactId>
                    <configuration>
                        <source>1.7</source>
                        <target>1.7</target>
                    </configuration>
                </plugin>
                <plugin>
                    <artifactId>maven-release-plugin</artifactId>
                    <configuration>
                        <tag>${project.rel.org.erasmusmc.data-mining:data-mining}</tag>
                        <preparationGoals>clean install</preparationGoals>
                    </configuration>
                </plugin>
                <plugin>
                    <artifactId>maven-assembly-plugin</artifactId>
                    <version>${maven.assembly.plugin.version}</version>
                </plugin>
                <plugin>
                    <artifactId>maven-jar-plugin</artifactId>
                    <version>${maven.jar.plugin.version}</version>
                </plugin>
                <plugin>
                    <groupId>org.jvnet.jaxb2.maven2</groupId>
                    <artifactId>maven-jaxb2-plugin</artifactId>
                    <version>${maven.jaxb2.plugin.version}</version>
                </plugin>
            </plugins>
        </pluginManagement>
    </build>

    <modules>
        <module>ontology</module>
        <module>peregrine</module>
        <module>release</module>
    </modules>
    <reporting>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-checkstyle-plugin</artifactId>
                <version>2.12</version>
                <configuration>
                    <configLocation>config/sun_checks.xml</configLocation>
                    <checkstyleRules>
                        <module name="LineLength">
                            <property name="max" value="120" />
                        </module>
                    </checkstyleRules>
                </configuration>
            </plugin>
        </plugins>
    </reporting>
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <commons.logging.version>1.2</commons.logging.version>
        <commons.lang.version>2.4</commons.lang.version>
        <commons.collections.version>3.2</commons.collections.version>
        <commons.dbcp.version>1.2.2</commons.dbcp.version>
        <commons.io.version>2.4</commons.io.version>
        <commons.compress.version>1.0</commons.compress.version>
        <commons.fileupload.version>1.2.1</commons.fileupload.version>
        <com.google.guava.version>r05</com.google.guava.version>
        <spring.version>3.2.1.RELEASE</spring.version>
        <log4j.version>1.2.17</log4j.version>
        <mysql.connector.version>5.1.6</mysql.connector.version>
        <junit.version>4.11</junit.version>
        <easymock.version>3.0</easymock.version>
        <maven.scm.plugin.version>1.4</maven.scm.plugin.version>
        <buildnumber.maven.plugin.version>1.0</buildnumber.maven.plugin.version>
        <maven.scm.provider.svnjava.version>1.2</maven.scm.provider.svnjava.version>
        <maven.jaxb2.plugin.version>0.9.0</maven.jaxb2.plugin.version>
        <maven.antrun.plugin.version>1.3</maven.antrun.plugin.version>
        <maven.assembly.plugin.version>2.2-beta-5</maven.assembly.plugin.version>
        <maven.resource.plugin.version>2.6</maven.resource.plugin.version>
        <maven.compiler.plugin.version>3.1</maven.compiler.plugin.version>
        <maven.jar.plugin.version>2.4</maven.jar.plugin.version>
        <jacoco-maven-plugin.version>0.7.0.201403182114</jacoco-maven-plugin.version>
    </properties>
</project>