Description

<dependency>
    <groupId>it.polimi.genomics</groupId>
    <artifactId>GMQL-Cli</artifactId>
    <version>5.0</version>
</dependency>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <parent>
        <artifactId>gmql</artifactId>
        <groupId>it.polimi.genomics</groupId>
        <version>5.0</version>
    </parent>

    <artifactId>GMQL-Cli</artifactId>
    <description>Command line interface</description>

    <packaging>jar</packaging>
    <properties>
        
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
        <encoding>UTF-8</encoding>
        <scala.version>2.11.8</scala.version>
    </properties>

    <dependencies>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Server</artifactId>
            <version>5.0</version>
        </dependency>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Core</artifactId>
            <version>5.0</version>
        </dependency>

        
            
            
            
        

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>GMQL-Spark</artifactId>
            <version>5.0</version>
            
                
                    
                    
                
            
        </dependency>

        <dependency>
            <groupId>it.polimi.genomics</groupId>
            <artifactId>Compiler</artifactId>
            <version>5.0</version>
        </dependency>

        <dependency>
            <groupId>log4j</groupId>
            <artifactId>log4j</artifactId>
            <version>1.2.17</version>
        </dependency>


    </dependencies>

    <build>

        <resources>
            <resource>
                <directory>../GMQL-Core</directory>
                <includes>
                    <include>log4j.dtd</include>
                </includes>
            </resource>
        </resources>

        <sourceDirectory>./src/main/scala</sourceDirectory>
        <plugins>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-shade-plugin</artifactId>
                <version>2.3</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>shade</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <shadedArtifactAttached>true</shadedArtifactAttached>
                    <shadedClassifierName>jackofall</shadedClassifierName> 
                    
                    <transformers>
                        <transformer implementation="org.apache.maven.plugins.shade.resource.ServicesResourceTransformer" />
                    </transformers>
                    <filters>
                        <filter>
                            <artifact>*:*</artifact>
                            <excludes>
                                <exclude>META-INF/*.SF</exclude>
                                <exclude>META-INF/*.DSA</exclude>
                                <exclude>META-INF/*.RSA</exclude>
                            </excludes>
                        </filter>
                    </filters>
                    <finalName>uber-${project.artifactId}-${project.version}</finalName>
                </configuration>
            </plugin>
            
            
                
                
                    
                        
                        
                            
                        
                        
                            
                        
                    
                
            

            

            
                
                
                
                
                    
                        
                        
                            
                        
                    
                
                
                    
                        
                            
                                
                                
                            
                        
                    
                    
                        
                            
                            
                                
                                
                                
                            
                        
                    
                    
                
            


            <plugin>
                <groupId>org.scala-tools</groupId>
                <artifactId>maven-scala-plugin</artifactId>

                <executions>
                    <execution>
                        <id>compile</id>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                        <phase>compile</phase>
                    </execution>

                    <execution>
                        <id>test-compile</id>
                        <goals>
                            <goal>testCompile</goal>
                        </goals>
                        <phase>test-compile</phase>
                    </execution>

                    <execution>
                        <phase>process-resources</phase>
                        <goals>
                            <goal>compile</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.3</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>

            

            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>2.4.1</version>
                <configuration>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                    <archive>
                        <manifestEntries>
                            <Main-Class>it.polimi.genomics.cli.GMQLExecuteCommand</Main-Class>
                        </manifestEntries>
                    </archive>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <configuration>
                    <archive>
                        <manifest>
                            <mainClass>it.polimi.genomics.cli.GMQLExecuteCommand</mainClass>
                        </manifest>
                    </archive>
                    
                </configuration>
            </plugin>

            
                
                
                
                
                    
                        
                        
                        
                            
                        
                        
                            
                            
                            
                                
                                    
                                    
                                    
                                    
                                        
                                    
                                
                            
                        
                    
                
            


            
                
                
                
                
                    
                        
                            
                            
                        
                        
                            
                            
                            
                            
                                
                                    
                                    
                                
                            
                        
                    
                
            

            <plugin>
                <groupId>net.alchim31.maven</groupId>
                <artifactId>scala-maven-plugin</artifactId>
                <version>3.2.2</version>
                <executions>
                    <execution>
                        <id>Scaladoc</id>
                        <goals>
                            <goal>doc</goal>
                        </goals>
                        <phase>prepare-package</phase>
                        <configuration>
                            <args>
                                <arg>-no-link-warnings</arg>
                            </args>
                        </configuration>
                    </execution>
                    <execution>
                        <id>Compile</id>
                        <goals>
                            <goal>compile</goal>
                            <goal>testCompile</goal>
                        </goals>
                        <configuration>
                            <args>
                                <arg>-dependencyfile</arg>
                                <arg>${project.build.directory}/.scala_dependencies</arg>
                            </args>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
        </plugins>


    </build>

    
        
            
                
                
                
            
            
                
                
                

            
            
                
                
                
            
        
    
</project>