Description

<dependency>
    <groupId>io.github.cbioportal</groupId>
    <artifactId>cbioportal</artifactId>
    <version>v7.0.5</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <groupId>org.springframework.boot</groupId>
    <artifactId>spring-boot-starter-parent</artifactId>
    <version>3.5.6</version>
  </parent>

  <groupId>io.github.cbioportal</groupId>
  <artifactId>cbioportal</artifactId>
  <version>v7.0.5</version>
  <packaging>jar</packaging>
  <description>cBioPortal for Cancer Genomics</description>

  <properties>
    <m2e.apt.activation>jdt_apt</m2e.apt.activation>
    <!-- <maven.compiler.release>21</maven.compiler.release>-->
    <sonar.java.source>21</sonar.java.source>
    <java.version>21</java.version>
    <maven.compiler.source>21</maven.compiler.source>
    <maven.compiler.target>21</maven.compiler.target>
    <maven.build.timestamp.format>yyyyMMdd-HHmm</maven.build.timestamp.format>
    <timestamp>${maven.build.timestamp}</timestamp>
    <!-- TODO replace with version of cbioportal frontend with compatible login url-->
    <frontend.groupId>io.github.cbioportal</frontend.groupId>
    <frontend.artifactId>frontend-cbioportal</frontend.artifactId>
    <frontend.version>v7.0.5</frontend.version>
    <!-- THIS SHOULD BE KEPT IN SYNC TO VERSION IN CGDS.SQL -->
    <db.version>2.14.5</db.version>
    <derived_table.version>1.0.11</derived_table.version>

    <!-- Version properties for dependencies that should have same version. -->
    <!-- The rest can be set in the dependencyManagement section -->
    <spring.social.version>1.1.6.RELEASE</spring.social.version>

    <jackson.version>2.12.5</jackson.version>
    <mysql-connector.version>8.0.28</mysql-connector.version>
    <mysql.version>8.2.0</mysql.version>
    <springfox.version>3.0.0</springfox.version>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>

    <!-- Sonar -->
    <sonar.projectKey>cBioPortal_cbioportal</sonar.projectKey>
    <sonar.moduleKey>${project.groupId}:${project.artifactId}</sonar.moduleKey>
    <sonar.organization>cbioportal</sonar.organization>
    <sonar.host.url>https://sonarcloud.io</sonar.host.url>
    <sonar.coverage.exclusions>**src/test/**/*.*</sonar.coverage.exclusions>

    <!-- JaCoCo Properties -->
    <jacoco.version>0.8.11</jacoco.version>
    <sonar.java.coveragePlugin>jacoco</sonar.java.coveragePlugin>
    <sonar.dynamicAnalysis>reuseReports</sonar.dynamicAnalysis>
    <sonar.language>java</sonar.language>
    <sonar.coverage.jacoco.xmlReportPaths>
      ${project.basedir}/target/site/jacoco/jacoco.xml</sonar.coverage.jacoco.xmlReportPaths>

    <db.test.driver>com.mysql.jdbc.Driver</db.test.driver>
    <!-- For MySQL < 5.5 change 'default_storage_engine' to 'storage_engine' -->
    <db.test.url>
      jdbc:mysql://127.0.0.1:3306/cgds_test?sessionVariables=default_storage_engine=InnoDB&amp;allowLoadLocalInfile=true</db.test.url>
    <db.test.username>cbio_user</db.test.username>
    <db.test.password>somepassword</db.test.password>

    <!--For
    tomcat instances, the scope to tomcat catalina lib should be provided. this prop is used in
    portal module.-->
    <tomcat.catalina.scope>provided</tomcat.catalina.scope>
    <tomcat.session.timeout>720</tomcat.session.timeout>

    <!-- Unknown -->
    <io.swagger.version>1.6.3</io.swagger.version>
    <mybatis.starter.version>3.0.4</mybatis.starter.version>
    <testcontainers.version>1.21.4</testcontainers.version>
    <opensaml.version>4.1.1</opensaml.version>

    <!-- Third Party -->
    <redisson.version>3.22.0</redisson.version>
    <commons-math3.version>3.6.1</commons-math3.version>
    <springdoc.version>2.8.3</springdoc.version>
    <apache-commons-collections.version>4.4</apache-commons-collections.version>
    <io-jsonwebtoken.version>0.11.2</io-jsonwebtoken.version>
    <mongodb_bson.version>4.11.0</mongodb_bson.version>
    <google_guava.version>32.1.3-jre</google_guava.version>
    <commons_codec.version>1.16.0</commons_codec.version>
    <commons_validator.version>1.10.0</commons_validator.version>
    <simple_java_bitly.version>1.1</simple_java_bitly.version>
    <ehcache.version>3.7.1</ehcache.version>
    <json_simple.version>1.1.1</json_simple.version>
    <mongo_java_driver.version>3.12.14</mongo_java_driver.version>
    <datumbox.version>0.8.2</datumbox.version>
    <selenium_chrome_driver.version>3.14.0</selenium_chrome_driver.version>
    <selenium.version>4.31.0</selenium.version>
    <sentry.version>7.1.0</sentry.version>
    <clickhouse_testcontainer.version>1.19.7</clickhouse_testcontainer.version>
    <bouncy_castle.version>1.78</bouncy_castle.version>
    <mapstruct.version>1.6.3</mapstruct.version>
    <tomcat.version>10.1.45</tomcat.version>
    <velocity.version>2.4</velocity.version>

    <!-- No sure what these are for -->
    <bundle.symbolicName.prefix>org.mskcc</bundle.symbolicName.prefix>
    <bundle.namespace>org.mskcc.mondrian</bundle.namespace>

    <!-- Maven Central -->
    <mavenCentralDeploymentName>Deployment</mavenCentralDeploymentName>

    <skipIntegrationTests>true</skipIntegrationTests>
    <skipE2ETests>True</skipE2ETests>
  </properties>

  <!-- Maven Central Requirements -->
  <name>${project.groupId}:${project.artifactId}</name>
  <url>https://www.cbioportal.org</url>
  <licenses>
    <license>
      <name>GNU AFFERO GENERAL PUBLIC LICENSE v3.0</name>
      <url>https://www.gnu.org/licenses/agpl-3.0.html</url>
    </license>
  </licenses>
  <developers>
    <developer>
      <name>Zain Nasir</name>
      <email>nasirz1@mskcc.org</email>
      <organization>Memorial Sloan Kettering Cancer Center</organization>
      <organizationUrl>https://www.mskcc.org/</organizationUrl>
    </developer>
  </developers>
  <scm>
    <connection>scm:git:git://github.com/cBioPortal/cbioportal.git</connection>
    <developerConnection>scm:git:ssh://github.com:cBioPortal/cbioportal.git</developerConnection>
    <url>https://github.com/cBioPortal/cbioportal/tree/master</url>
  </scm>

  <dependencies>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-test</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.vintage</groupId>
      <artifactId>junit-vintage-engine</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>com.tngtech.archunit</groupId>
      <artifactId>archunit-junit5</artifactId>
      <version>1.3.0</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
    </dependency>
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-core</artifactId>
    </dependency>
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
    </dependency>
    <dependency>
      <groupId>pl.pragmatists</groupId>
      <artifactId>JUnitParams</artifactId>
      <version>1.1.0</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-web</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-validation</artifactId>
    </dependency>
    <dependency>
      <groupId>org.mybatis.spring.boot</groupId>
      <artifactId>mybatis-spring-boot-starter</artifactId>
      <version>${mybatis.starter.version}</version>
    </dependency>
    <dependency>
      <groupId>org.redisson</groupId>
      <artifactId>redisson</artifactId>
      <version>${redisson.version}</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-math3</artifactId>
      <version>${commons-math3.version}</version>
    </dependency>
    <dependency>
      <groupId>org.springdoc</groupId>
      <artifactId>springdoc-openapi-starter-webmvc-ui</artifactId>
      <version>${springdoc.version}</version>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-core</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-collections4</artifactId>
      <version>${apache-commons-collections.version}</version>
    </dependency>
    <dependency>
      <groupId>io.jsonwebtoken</groupId>
      <artifactId>jjwt-api</artifactId>
      <version>${io-jsonwebtoken.version}</version>
    </dependency>
    <dependency>
      <groupId>io.jsonwebtoken</groupId>
      <artifactId>jjwt-impl</artifactId>
      <version>${io-jsonwebtoken.version}</version>
    </dependency>
    <dependency>
      <groupId>io.jsonwebtoken</groupId>
      <artifactId>jjwt-jackson</artifactId>
      <version>${io-jsonwebtoken.version}</version>
    </dependency>
    <dependency>
      <groupId>com.google.guava</groupId>
      <artifactId>guava</artifactId>
      <version>${google_guava.version}</version>
    </dependency>
    <dependency>
      <groupId>commons-codec</groupId>
      <artifactId>commons-codec</artifactId>
      <version>${commons_codec.version}</version>
    </dependency>
    <dependency>
      <groupId>commons-validator</groupId>
      <artifactId>commons-validator</artifactId>
      <version>${commons_validator.version}</version>
    </dependency>
    <dependency>
      <groupId>com.github.romain-warnan</groupId>
      <artifactId>simple-java-bitly</artifactId>
      <version>${simple_java_bitly.version}</version>
      <exclusions>
        <exclusion>
          <groupId>org.apache.httpcomponents</groupId>
          <artifactId>httpclient</artifactId>
        </exclusion>
      </exclusions>
    </dependency>
    <dependency>
      <groupId>org.ehcache</groupId>
      <artifactId>ehcache</artifactId>
      <version>${ehcache.version}</version>
    </dependency>
    <dependency>
      <groupId>com.googlecode.json-simple</groupId>
      <artifactId>json-simple</artifactId>
      <version>${json_simple.version}</version>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-cache</artifactId>
    </dependency>
    <dependency>
      <groupId>com.datumbox</groupId>
      <artifactId>datumbox-framework-lib</artifactId>
      <version>${datumbox.version}</version>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-config</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-web</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-jwt</artifactId>
      <version>1.1.1.RELEASE</version>
      <exclusions>
        <exclusion>
          <groupId>org.bouncycastle</groupId>
          <artifactId>bcprov-jdk15on</artifactId>
        </exclusion>
        <exclusion>
          <groupId>org.bouncycastle</groupId>
          <artifactId>bcpkix-jdk15on</artifactId>
        </exclusion>
      </exclusions>
    </dependency>
    <dependency>
      <groupId>com.auth0</groupId>
      <artifactId>jwks-rsa</artifactId>
      <version>0.22.1</version>
    </dependency>
    <dependency>
      <groupId>com.mysql</groupId>
      <artifactId>mysql-connector-j</artifactId>
      <version>${mysql.version}</version>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-thymeleaf</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-test</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.seleniumhq.selenium</groupId>
      <artifactId>selenium-java</artifactId>
      <version>${selenium.version}</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.testcontainers</groupId>
      <artifactId>testcontainers</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.testcontainers</groupId>
      <artifactId>mysql</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.testcontainers</groupId>
      <artifactId>selenium</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>com.h2database</groupId>
      <artifactId>h2</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-data-mongodb</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-oauth2-client</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-oauth2-resource-server</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.security</groupId>
      <artifactId>spring-security-saml2-service-provider</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.session</groupId>
      <artifactId>spring-session-data-redis</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-starter-data-redis</artifactId>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-devtools</artifactId>
      <scope>runtime</scope>
      <optional>true</optional>
    </dependency>
    <dependency>
      <groupId>io.sentry</groupId>
      <artifactId>sentry-spring-boot-starter-jakarta</artifactId>
      <version>${sentry.version}</version>
    </dependency>
    <dependency>
      <groupId>org.apache.httpcomponents.client5</groupId>
      <artifactId>httpclient5</artifactId>
      <scope>test</scope>
    </dependency>

    <dependency>
      <groupId>com.clickhouse</groupId>
      <artifactId>clickhouse-jdbc</artifactId>
      <version>0.6.2</version>
      <!-- use uber jar with all dependencies included, change classifier
      to http for smaller jar -->
      <classifier>all</classifier>
    </dependency>
    <dependency>
      <groupId>org.testcontainers</groupId>
      <artifactId>clickhouse</artifactId>
      <version>${clickhouse_testcontainer.version}</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.mybatis.spring.boot</groupId>
      <artifactId>mybatis-spring-boot-test-autoconfigure</artifactId>
      <version>3.0.3</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.springframework.boot</groupId>
      <artifactId>spring-boot-testcontainers</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.mapstruct</groupId>
      <artifactId>mapstruct</artifactId>
      <version>${mapstruct.version}</version>
    </dependency>
    <!-- Add OSGi dependency needed  because compile time of org.ehcache -->
    <!-- ehcache should be removed -->
    <dependency>
      <groupId>org.osgi</groupId>
      <artifactId>org.osgi.service.component.annotations</artifactId>
      <version>1.5.1</version>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>com.zaxxer</groupId>
      <artifactId>HikariCP</artifactId>
    </dependency>
  </dependencies>

  <dependencyManagement>
    <dependencies>
      <dependency>
        <groupId>org.testcontainers</groupId>
        <artifactId>testcontainers-bom</artifactId>
        <version>${testcontainers.version}</version>
        <type>pom</type>
        <scope>import</scope>
      </dependency>
      <dependency>
        <groupId>org.bouncycastle</groupId>
        <artifactId>bcpkix-jdk18on</artifactId>
        <version>${bouncy_castle.version}</version>
      </dependency>
      <dependency>
        <groupId>org.bouncycastle</groupId>
        <artifactId>bcprov-jdk18on</artifactId>
        <version>${bouncy_castle.version}</version>
      </dependency>
      <!-- set newer versions of velocity to prevent pulling in old commons-io version that has vulnerabilities -->
      <dependency>
        <groupId>org.apache.velocity</groupId>
        <artifactId>velocity-engine-core</artifactId>
        <version>${velocity.version}</version>
      </dependency>
    </dependencies>
  </dependencyManagement>

  <build>
    <finalName>cbioportal</finalName>
    <pluginManagement>
      <plugins>
        <plugin>
          <groupId>org.apache.maven.plugins</groupId>
          <artifactId>maven-wrapper-plugin</artifactId>
          <version>3.2.0</version>
        </plugin>
      </plugins>
    </pluginManagement>

    <filters>
      <filter>src/main/resources/application.properties</filter>
      <filter>src/main/resources/maven.properties</filter>
    </filters>

    <resources>
      <!-- copy over resources directory into classpath of product -->
      <resource>
        <directory>src/main/resources</directory>
        <filtering>true</filtering>
        <excludes>
          <exclude>artwork/**</exclude>
          <exclude>content/**</exclude>
          <exclude>tutorials/**</exclude>
          <exclude>webapp/**</exclude>
          <exclude>templates/**</exclude>
          <exclude>*.pdf</exclude>
          <exclude>db-scripts/**</exclude>
        </excludes>
      </resource>
      <resource>
        <directory>src/main/resources</directory>
        <filtering>false</filtering>
        <includes>
          <include>webapp/**</include>
          <include>templates/**</include>
        </includes>
      </resource>
      <!-- copy over database schema and migration logic into classpath of
      product -->
      <resource>
        <directory>src/main/resources/db-scripts</directory>
        <targetPath>db-scripts</targetPath>
        <filtering>false</filtering>
        <includes>
          <include>cgds.sql</include>
          <include>migration.sql</include>
          <include>clickhouse/clickhouse.sql</include>
          <include>clickhouse/materialized_views.sql</include>
        </includes>
      </resource>
    </resources>
    <testResources>
      <testResource>
        <directory>src/main/resources/db-scripts</directory>
        <filtering>false</filtering>
        <includes>
          <include>clickhouse/materialized_views.sql</include>
        </includes>
      </testResource>
      <testResource>
        <directory>src/test/resources</directory>
        <filtering>false</filtering>
      </testResource>
    </testResources>

    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>3.13.0</version>
        <configuration>
          <release>21</release>
          <annotationProcessorPaths>
            <path>
              <groupId>org.mapstruct</groupId>
              <artifactId>mapstruct-processor</artifactId>
              <version>${mapstruct.version}</version>
            </path>
          </annotationProcessorPaths>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-maven-plugin</artifactId>
        <executions>
          <execution>
            <id>repackage</id>
            <configuration>
              <classifier>exec</classifier>
            </configuration>
          </execution>
        </executions>
      </plugin>
      <!-- write git version properties file (git.properties) -->
      <plugin>
        <groupId>io.github.git-commit-id</groupId>
        <artifactId>git-commit-id-maven-plugin</artifactId>
        <version>5.0.0</version>
        <executions>
          <execution>
            <id>get-the-git-infos</id>
            <phase>initialize</phase>
            <goals>
              <goal>revision</goal>
            </goals>
          </execution>
          <execution>
            <id>validate-the-git-infos</id>
            <phase>package</phase>
            <goals>
              <goal>validateRevision</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <dotGitDirectory>${project.basedir}/.git</dotGitDirectory>
          <generateGitPropertiesFile>true</generateGitPropertiesFile>
          <generateGitPropertiesFilename>
            ${project.build.outputDirectory}/git.properties</generateGitPropertiesFilename>
          <commitIdGenerationMode>full</commitIdGenerationMode>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-dependency-plugin</artifactId>
        <executions>
          <execution>
            <id>unpack</id>
            <phase>prepare-package</phase>
            <goals>
              <goal>unpack</goal>
            </goals>
            <configuration>
              <artifactItems>
                <artifactItem>
                  <groupId>${frontend.groupId}</groupId>
                  <artifactId>${frontend.artifactId}</artifactId>
                  <version>${frontend.version}</version>
                  <type>jar</type>
                  <outputDirectory>
                    ${project.build.directory}/classes</outputDirectory>
                  <excludes>*index*</excludes>
                  <overWrite>true</overWrite>
                </artifactItem>
              </artifactItems>
            </configuration>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-wrapper-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.jacoco</groupId>
        <artifactId>jacoco-maven-plugin</artifactId>
        <version>${jacoco.version}</version>
        <executions>
          <execution>
            <id>default-prepare-agent</id>
            <goals>
              <goal>prepare-agent</goal>
            </goals>
          </execution>
          <execution>
            <id>default-report</id>
            <goals>
              <goal>report</goal>
            </goals>
            <configuration>
              <formats>
                <format>XML</format>
              </formats>
            </configuration>
          </execution>
        </executions>
      </plugin>

      <!-- config for unit and integration tests -->
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>build-helper-maven-plugin</artifactId>
        <version>3.6.0</version>
        <executions>
          <execution>
            <id>add-integration-test-source</id>
            <phase>generate-test-sources</phase>
            <goals>
              <goal>add-test-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/integration/java</source>
              </sources>
            </configuration>
          </execution>
          <execution>
            <id>add-integration-test-resource</id>
            <phase>generate-test-resources</phase>
            <goals>
              <goal>add-test-resource</goal>
            </goals>
            <configuration>
              <resources>
                <resource>
                  <directory>src/integration/resources</directory>
                </resource>
              </resources>
            </configuration>
          </execution>
          <execution>
            <id>add-e2e-test-source</id>
            <phase>generate-test-sources</phase>
            <goals>
              <goal>add-test-source</goal>
            </goals>
            <configuration>
              <sources>
                <source>src/e2e/java</source>
              </sources>
            </configuration>
          </execution>
          <execution>
            <id>add-e2e-test-resource</id>
            <phase>generate-test-resources</phase>
            <goals>
              <goal>add-test-resource</goal>
            </goals>
            <configuration>
              <resources>
                <resource>
                  <directory>src/e2e/resources</directory>
                </resource>
              </resources>
            </configuration>
          </execution>
        </executions>
      </plugin>

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <configuration>
          <skipTests>${skipTests}</skipTests>
          <excludes>
            <exclude>**/*IntegrationTest.java</exclude>
            <exclude>**/*E2ETest.java</exclude>
          </excludes>
        </configuration>
      </plugin>
      <plugin>
        <artifactId>maven-failsafe-plugin</artifactId>
        <executions>
          <execution>
            <id>integration-test</id>
            <configuration>
              <!-- Skip clickhouse integration tests for now -->
              <skipTests>true</skipTests>
              <includes>
                <include>**/*IntegrationTest.java</include>
              </includes>
            </configuration>
            <goals>
              <goal>integration-test</goal>
              <goal>verify</goal>
            </goals>
          </execution>
          <execution>
            <id>e2e-test</id>
            <configuration>
              <skipTests>${skipE2ETests}</skipTests>
              <includes>
                <include>**/*E2ETest.java</include>
              </includes>
            </configuration>
            <goals>
              <goal>integration-test</goal>
              <goal>verify</goal>
            </goals>
          </execution>
        </executions>
      </plugin>

      <!-- Configuration for code formatting -->
      <plugin>
        <groupId>com.diffplug.spotless</groupId>
        <artifactId>spotless-maven-plugin</artifactId>
        <version>2.44.3</version>
        <configuration>
          <java>
            <includes>
              <include>src/main/java/**/*.java</include> <!-- Check application code -->
              <include>src/test/java/**/*.java</include> <!-- Check application tests code -->
            </includes>
            <googleJavaFormat>
              <version>1.25.2</version>
              <style>GOOGLE</style>
            </googleJavaFormat>
            <importOrder /> <!-- standard import order -->
            <removeUnusedImports /> <!-- self-explanatory -->
          </java>
        </configuration>
        <executions>
          <execution>
            <goals>
              <goal>check</goal>
              <goal>apply</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <!-- Setup spotless formatter pre-commit hoot -->
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-antrun-plugin</artifactId>
        <version>3.1.0</version>
        <executions>
          <execution>
            <phase>validate</phase>
            <goals>
              <goal>run</goal>
            </goals>
            <configuration>
              <target>
                <!-- Run the shell script to modify the pre-commit hook -->
                <exec executable="bash">
                  <arg value="${project.basedir}/.githooks/spotless_pre_commit_hook.sh" />
                </exec>
              </target>
            </configuration>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>

  <reporting>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-javadoc-plugin</artifactId>
        <configuration>
          <doclet>org.umlgraph.doclet.UmlGraphDoc</doclet>
          <docletArtifact>
            <groupId>org.umlgraph</groupId>
            <artifactId>umlgraph</artifactId>
            <version>5.6</version>
          </docletArtifact>
          <additionalparam>-views -all</additionalparam>
          <useStandardDocletOptions>true</useStandardDocletOptions>
        </configuration>
      </plugin>
    </plugins>
  </reporting>

  <pluginRepositories>
    <pluginRepository>
      <id>maven-snapshots</id>
      <url>https://repository.apache.org/content/repositories/snapshots/</url>
    </pluginRepository>
    <pluginRepository>
      <id>maven-shade-plugin</id>
      <url>
        https://mvnrepository.com/artifact/org.apache.maven.plugins/maven-shade-plugin</url>
    </pluginRepository>
  </pluginRepositories>

  <repositories>
    <!-- needed for the opensaml dependency -->
    <repository>
      <id>shiboleth</id>
      <url>
        https://build.shibboleth.net/nexus/content/repositories/releases/</url>
    </repository>
    <!-- needed for keycloak test containers -->
    <repository>
      <id>maven-central</id>
      <url>https://repo1.maven.org/maven2/</url>
    </repository>
  </repositories>

  <profiles>
    <profile>
      <id>default</id>
      <activation>
        <activeByDefault>true</activeByDefault>
      </activation>
      <properties>
        <skipTests>false</skipTests>
        <!-- skipITs is an official Maven param; do not rename-->
        <skipITs>true</skipITs>
      </properties>
    </profile>
    <profile>
      <id>integration-test</id>
      <properties>
        <skipTests>true</skipTests>
        <!-- skipITs is an official Maven param; do not rename-->
        <skipIntegrationTests>false</skipIntegrationTests>
        <skipE2ETests>false</skipE2ETests>
      </properties>
    </profile>
    <profile>
      <id>e2e-test</id>
      <properties>
        <skipTests>true</skipTests>
        <!-- skipITs is an official Maven param; do not rename-->
        <skipIntegrationTests>true</skipIntegrationTests>
        <skipE2ETests>false</skipE2ETests>
      </properties>
    </profile>
    <!-- Maven Central -->
    <profile>
      <id>maven-central</id>
      <activation>
        <property>
          <name>mavenCentral</name>
          <value>true</value>
        </property>
      </activation>
      <build>
        <plugins>
          <plugin>
            <groupId>org.sonatype.central</groupId>
            <artifactId>central-publishing-maven-plugin</artifactId>
            <version>0.7.0</version>
            <extensions>true</extensions>
            <configuration>
              <publishingServerId>central</publishingServerId>
              <autoPublish>true</autoPublish>
              <deploymentName>${mavenCentralDeploymentName}</deploymentName>
            </configuration>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-source-plugin</artifactId>
            <version>3.3.0</version>
            <executions>
              <execution>
                <id>attach-sources</id>
                <phase>verify</phase>
                <goals>
                  <goal>jar-no-fork</goal>
                </goals>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-gpg-plugin</artifactId>
            <version>3.1.0</version>
            <executions>
              <execution>
                <id>sign-artifacts</id>
                <phase>verify</phase>
                <goals>
                  <goal>sign</goal>
                </goals>
              </execution>
            </executions>
            <configuration>
              <gpgArguments>
                <arg>--pinentry-mode</arg>
                <arg>loopback</arg>
              </gpgArguments>
            </configuration>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-javadoc-plugin</artifactId>
            <version>3.6.3</version>
            <executions>
              <execution>
                <id>attach-javadoc</id>
                <goals>
                  <goal>jar</goal>
                </goals>
              </execution>
            </executions>
            <configuration>
              <stylesheet>java</stylesheet>
              <doclint>none</doclint>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>

</project>