Description

<dependency>
    <groupId>gov.nih.ncats</groupId>
    <artifactId>molwitch-cdk</artifactId>
    <version>1.0.24</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>gov.nih.ncats</groupId>
    <artifactId>molwitch-cdk</artifactId>
    <version>1.0.24</version>
    <name>molwitch-cdk</name>

    <url>https://github.com/ncats/molwitch-cdk/</url>
    <description>MolWitch implementation that uses CDK as the underlying cheminformatics framework.</description>
    <organization>
        <name>NIH/NCATS</name>
        <url>https://ncats.nih.gov</url>
    </organization>

    <properties>
        <cdk.version>2.9</cdk.version>
        <centres.version>1.2.1</centres.version>
    </properties>
    <repositories>
        <!--repository>
            <id>oss.sonatype.org-snapshot</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
            <releases>
                <enabled>false</enabled>
            </releases>
            <snapshots>
                <enabled>true</enabled>
            </snapshots>
        </repository-->
         <repository>
            <id>oss.sonatype.org</id>
            <url>https://repo1.maven.org/maven2/</url>
            <releases>
                <enabled>true</enabled>
            </releases>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
        </repository>
    </repositories>

    <developers>
        <developer>
            <id>katzelda</id>
            <name>Daniel Katzel</name>
            <email>daniel.katzel@nih.gov</email>
            <roles>
                <role>architect</role>
                <role>developer</role>
            </roles>
            <timezone>America/New_York</timezone>
        </developer>
    </developers>

    <scm>
        <url>https://github.com/ncats/molwitch-cdk.git</url>
    </scm>

    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
        <repository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
        </repository>
    </distributionManagement>
    <licenses>
        <license>
            <name>GNU LGPL 2.1 or later</name>
            <url>http://www.gnu.org/licenses/lgpl.html</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <dependencies>
        <dependency>
            <groupId>gov.nih.ncats</groupId>
            <artifactId>molwitch</artifactId>
            <version>0.6.10</version>
			<exclusions>
				<exclusion>
					<groupId>org.apache.logging.log4j</groupId>
					<artifactId>log4j-api</artifactId>
				</exclusion>
			</exclusions>
        </dependency>
        <dependency>
            <groupId>gov.nih.ncats</groupId>
            <artifactId>ncats-common</artifactId>
            <version>0.3.6</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-interfaces</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-core</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-standard</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-atomtype</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <!-- This is required in CDK because some of their APIs use the JNI enums so this modules adds copies of them-->
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-jniinchi-support</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        
        
<dependency>
    <groupId>com.simolecule.centres</groupId>
    <artifactId>centres-core</artifactId>
    <version>${centres.version}</version>
</dependency>

<dependency>
    <groupId>com.simolecule.centres</groupId>
    <artifactId>centres-cdk</artifactId>
    <version>${centres.version}</version>
</dependency>
        
        
        
<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-valencycheck</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-data</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-ioformats</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-silent</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-isomorphism</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-io</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-formula</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/net.sf.jni-inchi/jni-inchi -->
<!--        <dependency>-->
<!--            <groupId>net.sf.jni-inchi</groupId>-->
<!--            <artifactId>jni-inchi</artifactId>-->
<!--            <version>0.8</version>-->
<!--        </dependency>-->

<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-libiocml</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-smiles</artifactId>
            <version>${cdk.version}</version>
        </dependency>
<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-extra</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-smarts</artifactId>
            <version>${cdk.version}</version>
        </dependency>
        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-fingerprint</artifactId>
            <version>${cdk.version}</version>
        </dependency>
<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-charges</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->
<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-forcefield</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->




        <dependency>
            <groupId>org.openscience.cdk</groupId>
            <artifactId>cdk-inchi</artifactId>
            <version>${cdk.version}</version>
        </dependency>


<!--        <dependency>-->
<!--            <groupId>org.openscience.cdk</groupId>-->
<!--            <artifactId>cdk-smsd</artifactId>-->
<!--            <version>${cdk.version}</version>-->
<!--        </dependency>-->
        <dependency>
            <groupId>gov.nih.ncats</groupId>
            <artifactId>molwitch-apitests</artifactId>
            <version>0.6.3</version>
            <type>test-jar</type>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.jooq</groupId>
            <artifactId>jool-java-8</artifactId>
            <version>0.9.13</version>
        </dependency>
        <dependency>
            <groupId>gov.nih.ncats</groupId>
            <artifactId>smsd-core</artifactId>
            <version>2.2.4</version>
            <exclusions>
                <exclusion>
                    <groupId>org.apache.logging.log4j</groupId>
                    <artifactId>log4j-1.2-api</artifactId>
                </exclusion>
            </exclusions>
        </dependency>
        <dependency>
            <groupId>gov.nih.ncats</groupId>
            <artifactId>smsd-exec</artifactId>
            <version>2.2.4</version>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.5.1</version>
                <configuration>
                    <source>1.8</source>
                    <target>1.8</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.19.1</version>
                <configuration>
                    <dependenciesToScan>
                        <dependency>gov.nih.ncats:molwitch-apitests</dependency>
                    </dependenciesToScan>
                </configuration>
            </plugin>
            <plugin>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>3.1.1</version>
                <configuration>
                    <descriptorRefs>
                        <descriptorRef>jar-with-dependencies</descriptorRef>
                    </descriptorRefs>
                </configuration>
                <executions>
                    <execution>
                        <id>make-assembly</id> <!-- this is used for inheritance merges -->
                        <phase>package</phase> <!-- bind to the packaging phase -->
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <configuration>
                    <source>11</source>
                    <target>11</target>
                </configuration>
            </plugin>


        </plugins>
    </build>


    <profiles>
        <profile>
            <id>ossrh</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.sonatype.plugins</groupId>
                        <artifactId>nexus-staging-maven-plugin</artifactId>
                        <version>1.6.13</version>
                        <extensions>true</extensions>
                        <configuration>
                            <serverId>ossrh</serverId>
                            <nexusUrl>https://oss.sonatype.org/</nexusUrl>
                            <autoReleaseAfterClose>true</autoReleaseAfterClose>
                        </configuration>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                        <version>3.1.0</version>
                        <executions>
                            <execution>
                                <id>sign-artifacts</id>
                                <phase>verify</phase>
                                <goals>
                                    <goal>sign</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-source-plugin</artifactId>
                        <version>2.2.1</version>
                        <executions>
                            <execution>
                                <id>attach-sources</id>
                                <goals>
                                    <goal>jar-no-fork</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-javadoc-plugin</artifactId>
                        <executions>
                            <execution>

                                <id>attach-javadocs</id>
                                <goals>
                                    <goal>jar</goal>
                                </goals>
                                <configuration>
                                    <additionalparam>-Xdoclint:none</additionalparam>
                                </configuration>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>
</project>