molwitch-cdk
Used in:
components
- OverviewOverview
- VersionsVersions
- DependentsDependents
- DependenciesDependencies
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>molwitch-cdk</artifactId>
<version>1.0.24</version>
</dependency><?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>gov.nih.ncats</groupId>
<artifactId>molwitch-cdk</artifactId>
<version>1.0.24</version>
<name>molwitch-cdk</name>
<url>https://github.com/ncats/molwitch-cdk/</url>
<description>MolWitch implementation that uses CDK as the underlying cheminformatics framework.</description>
<organization>
<name>NIH/NCATS</name>
<url>https://ncats.nih.gov</url>
</organization>
<properties>
<cdk.version>2.9</cdk.version>
<centres.version>1.2.1</centres.version>
</properties>
<repositories>
<!--repository>
<id>oss.sonatype.org-snapshot</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository-->
<repository>
<id>oss.sonatype.org</id>
<url>https://repo1.maven.org/maven2/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
</repositories>
<developers>
<developer>
<id>katzelda</id>
<name>Daniel Katzel</name>
<email>daniel.katzel@nih.gov</email>
<roles>
<role>architect</role>
<role>developer</role>
</roles>
<timezone>America/New_York</timezone>
</developer>
</developers>
<scm>
<url>https://github.com/ncats/molwitch-cdk.git</url>
</scm>
<distributionManagement>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</distributionManagement>
<licenses>
<license>
<name>GNU LGPL 2.1 or later</name>
<url>http://www.gnu.org/licenses/lgpl.html</url>
<distribution>repo</distribution>
</license>
</licenses>
<dependencies>
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>molwitch</artifactId>
<version>0.6.10</version>
<exclusions>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>ncats-common</artifactId>
<version>0.3.6</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-interfaces</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-core</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-standard</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-atomtype</artifactId>
<version>${cdk.version}</version>
</dependency>
<!-- This is required in CDK because some of their APIs use the JNI enums so this modules adds copies of them-->
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-jniinchi-support</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>com.simolecule.centres</groupId>
<artifactId>centres-core</artifactId>
<version>${centres.version}</version>
</dependency>
<dependency>
<groupId>com.simolecule.centres</groupId>
<artifactId>centres-cdk</artifactId>
<version>${centres.version}</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-valencycheck</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-data</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-ioformats</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-silent</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-isomorphism</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-io</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-formula</artifactId>
<version>${cdk.version}</version>
</dependency>
<!-- https://mvnrepository.com/artifact/net.sf.jni-inchi/jni-inchi -->
<!-- <dependency>-->
<!-- <groupId>net.sf.jni-inchi</groupId>-->
<!-- <artifactId>jni-inchi</artifactId>-->
<!-- <version>0.8</version>-->
<!-- </dependency>-->
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-libiocml</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-smiles</artifactId>
<version>${cdk.version}</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-extra</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-smarts</artifactId>
<version>${cdk.version}</version>
</dependency>
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-fingerprint</artifactId>
<version>${cdk.version}</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-charges</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-forcefield</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<dependency>
<groupId>org.openscience.cdk</groupId>
<artifactId>cdk-inchi</artifactId>
<version>${cdk.version}</version>
</dependency>
<!-- <dependency>-->
<!-- <groupId>org.openscience.cdk</groupId>-->
<!-- <artifactId>cdk-smsd</artifactId>-->
<!-- <version>${cdk.version}</version>-->
<!-- </dependency>-->
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>molwitch-apitests</artifactId>
<version>0.6.3</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.jooq</groupId>
<artifactId>jool-java-8</artifactId>
<version>0.9.13</version>
</dependency>
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>smsd-core</artifactId>
<version>2.2.4</version>
<exclusions>
<exclusion>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-1.2-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>gov.nih.ncats</groupId>
<artifactId>smsd-exec</artifactId>
<version>2.2.4</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.5.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.19.1</version>
<configuration>
<dependenciesToScan>
<dependency>gov.nih.ncats:molwitch-apitests</dependency>
</dependenciesToScan>
</configuration>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>3.1.1</version>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
<executions>
<execution>
<id>make-assembly</id> <!-- this is used for inheritance merges -->
<phase>package</phase> <!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>ossrh</id>
<build>
<plugins>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.13</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>3.1.0</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.2.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
<configuration>
<additionalparam>-Xdoclint:none</additionalparam>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>
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