mitools
Used in:
components
- OverviewOverview
- VersionsVersions
- DependentsDependents
- DependenciesDependencies
<dependency>
<groupId>com.milaboratory</groupId>
<artifactId>mitools</artifactId>
<version>1.5</version>
</dependency><?xml version="1.0"?>
<!--
~ Copyright 2015 MiLaboratory.com
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.milaboratory</groupId>
<artifactId>mitools</artifactId>
<version>1.5</version>
<packaging>jar</packaging>
<name>MiTools</name>
<url>https://github.com/milaboratory/mitools</url>
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>7</version>
<relativePath/>
</parent>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<milib.version>1.8</milib.version>
</properties>
<description>
Yet another Java library for Next Generation Sequencing (NGS) data processing.
</description>
<licenses>
<license>
<name>Apache License, Version 2.0</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
<distribution>repo</distribution>
</license>
</licenses>
<dependencies>
<dependency>
<groupId>com.milaboratory</groupId>
<artifactId>milib</artifactId>
<version>${milib.version}</version>
</dependency>
<dependency>
<groupId>com.milaboratory</groupId>
<artifactId>milib</artifactId>
<version>${milib.version}</version>
<type>test-jar</type>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.beust</groupId>
<artifactId>jcommander</artifactId>
<version>1.48</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-all</artifactId>
<version>1.9.5</version>
<scope>test</scope>
</dependency>
</dependencies>
<developers>
<developer>
<id>dbolotin</id>
<email>bolotin.dmitriy@gmail.com</email>
<name>Bolotin Dmitriy</name>
<organization>MiLaboratory</organization>
<organizationUrl>http://milaboratory.com/</organizationUrl>
<roles>
<role>architect</role>
<role>developer</role>
<role>tester</role>
<role>documentation</role>
</roles>
<timezone>UTC+04:00</timezone>
<url>https://github.com/dbolotin</url>
</developer>
<developer>
<id>PoslavskySV</id>
<email>stvlpos@mail.ru</email>
<name>Poslavsky Stanislav</name>
<organization>MiLaboratory</organization>
<organizationUrl>http://milaboratory.com/</organizationUrl>
<roles>
<role>architect</role>
<role>developer</role>
<role>tester</role>
<role>documentation</role>
</roles>
<timezone>UTC+04:00</timezone>
<url>https://github.com/PoslavskySV</url>
</developer>
<developer>
<id>mikesh</id>
<email>mikhail.shugay@gmail.com</email>
<name>Mikhail Shugay</name>
<organization>MiLaboratory</organization>
<organizationUrl>http://milaboratory.com/</organizationUrl>
<roles>
<role>developer</role>
<role>tester</role>
<role>documentation</role>
</roles>
<timezone>UTC+04:00</timezone>
<url>https://github.com/mikessh</url>
</developer>
</developers>
<scm>
<connection>scm:git:https://github.com/milaboratory/mitools.git</connection>
</scm>
<profiles>
<profile>
<id>release</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>2.2.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>2.9.1</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.5</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<build>
<plugins>
<plugin>
<!-- Workaround maven not being able to set a property conditionally -->
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>1.8</version>
<executions>
<execution>
<id>read_hostname</id>
<phase>validate</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<exportAntProperties>true</exportAntProperties>
<target>
<exec executable="hostname" failonerror="false" outputproperty="hostname"/>
<condition property="hostname" value="unknown">
<not>
<isset property="hostname"/>
</not>
</condition>
</target>
</configuration>
</execution>
<execution>
<id>delete_tokens</id>
<phase>process-sources</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<tasks>
<delete>
<fileset dir="${basedir}/src/main/java/" includes="*.tokens"/>
</delete>
</tasks>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>1.4</version>
<executions>
<execution>
<id>create-buildnumber</id>
<phase>validate</phase>
<goals>
<goal>create</goal>
</goals>
</execution>
<execution>
<id>create-metadata</id>
<phase>generate-resources</phase>
<goals>
<goal>create-metadata</goal>
</goals>
<configuration>
<properties>
<branch>${scmBranch}</branch>
<host>${hostname}</host>
</properties>
</configuration>
</execution>
</executions>
<configuration>
<doCheck>false</doCheck>
<doUpdate>false</doUpdate>
<attach>true</attach>
<outputName>${project.artifactId}-build.properties</outputName>
<shortRevisionLength>7</shortRevisionLength>
<addOutputDirectoryToResources>true</addOutputDirectoryToResources>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.17</version>
<configuration>
<forkMode>never</forkMode>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
<configuration>
<createDependencyReducedPom>false</createDependencyReducedPom>
<minimizeJar>true</minimizeJar>
<filters>
<filter>
<artifact>com.milaboratory:milib</artifact>
<includes>
<include>**</include>
</includes>
</filter>
</filters>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ApacheLicenseResourceTransformer">
</transformer>
<transformer implementation="org.apache.maven.plugins.shade.resource.ApacheNoticeResourceTransformer">
<addHeader>false</addHeader>
</transformer>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<mainClass>com.milaboratory.mitools.cli.Main</mainClass>
</transformer>
</transformers>
<shadedArtifactAttached>true</shadedArtifactAttached>
<shadedClassifierName>distribution</shadedClassifierName>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.4</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
</configuration>
</plugin>
</plugins>
</build>
</project>