Description

<dependency>
    <groupId>au.csiro.pathling</groupId>
    <artifactId>library-api</artifactId>
    <version>9.4.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>

<!--
  ~ Copyright © 2018-2025 Commonwealth Scientific and Industrial Research
  ~ Organisation (CSIRO) ABN 41 687 119 230.
  ~
  ~ Licensed under the Apache License, Version 2.0 (the "License");
  ~ you may not use this file except in compliance with the License.
  ~ You may obtain a copy of the License at
  ~
  ~     http://www.apache.org/licenses/LICENSE-2.0
  ~
  ~ Unless required by applicable law or agreed to in writing, software
  ~ distributed under the License is distributed on an "AS IS" BASIS,
  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  ~ See the License for the specific language governing permissions and
  ~ limitations under the License.
  -->

<project xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <artifactId>pathling</artifactId>
    <groupId>au.csiro.pathling</groupId>
    <version>9.4.0</version>
  </parent>
  <artifactId>library-api</artifactId>
  <packaging>jar</packaging>

  <name>Pathling Library API</name>
  <description>An API that exposes Pathling functionality to language libraries.</description>

  <dependencies>

    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>encoders</artifactId>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>terminology</artifactId>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>terminology</artifactId>
      <classifier>sources</classifier>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>fhirpath</artifactId>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>fhirpath</artifactId>
      <classifier>sources</classifier>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>utilities</artifactId>
    </dependency>
    <dependency>
      <groupId>au.csiro.fhir</groupId>
      <artifactId>bulk-export</artifactId>
    </dependency>
    <dependency>
      <groupId>au.csiro.fhir</groupId>
      <artifactId>bulk-export</artifactId>
      <classifier>sources</classifier>
    </dependency>

    <!-- Apache Spark -->
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-core_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-sql_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-catalyst_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>io.delta</groupId>
      <artifactId>delta-spark_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>jakarta.servlet</groupId>
      <artifactId>jakarta.servlet-api</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.hadoop</groupId>
      <artifactId>hadoop-client-api</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.scala-lang</groupId>
      <artifactId>scala-library</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.projectlombok</groupId>
      <artifactId>lombok</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.derby</groupId>
      <artifactId>derbytools</artifactId>
      <scope>test</scope>
    </dependency>

    <!-- HAPI FHIR -->
    <dependency>
      <groupId>ca.uhn.hapi.fhir</groupId>
      <artifactId>hapi-fhir-base</artifactId>
    </dependency>
    <dependency>
      <groupId>ca.uhn.hapi.fhir</groupId>
      <artifactId>hapi-fhir-structures-r4</artifactId>
    </dependency>

    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>com.google.code.findbugs</groupId>
      <artifactId>jsr305</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>commons-io</groupId>
      <artifactId>commons-io</artifactId>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-lang3</artifactId>
    </dependency>
    <dependency>
      <groupId>jakarta.validation</groupId>
      <artifactId>jakarta.validation-api</artifactId>
    </dependency>

    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>encoders</artifactId>
      <type>test-jar</type>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>utilities</artifactId>
      <type>test-jar</type>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>terminology</artifactId>
      <type>test-jar</type>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>fhirpath</artifactId>
      <type>test-jar</type>
      <scope>test</scope>
    </dependency>

    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-engine</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-api</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-params</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.mockito</groupId>
      <artifactId>mockito-core</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-hive_${pathling.scalaVersion}</artifactId>
      <scope>test</scope>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-source-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-dependency-plugin</artifactId>
        <executions>
          <execution>
            <id>unpack-encoders-tests</id>
            <phase>generate-test-resources</phase>
            <goals>
              <goal>unpack-dependencies</goal>
            </goals>
            <configuration>
              <includeGroupIds>au.csiro.pathling</includeGroupIds>
              <includeArtifactIds>encoders</includeArtifactIds>
              <includeTypes>test-jar</includeTypes>
              <includeScope>test</includeScope>
              <excludeTransitive>true</excludeTransitive>
              <outputDirectory>${project.build.directory}/encoders-tests</outputDirectory>
            </configuration>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.jacoco</groupId>
        <artifactId>jacoco-maven-plugin</artifactId>
        <configuration>
          <excludes>
            <exclude>au/csiro/pathling/fhirpath/parser/generated/*</exclude>
            <exclude>au/csiro/pathling/views/ansi/generated/*</exclude>
            <exclude>au/csiro/pathling/terminology/mock/*</exclude>
          </excludes>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jar-plugin</artifactId>
        <executions>
          <execution>
            <goals>
              <goal>test-jar</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <excludes>
            <exclude>**/logback.xml</exclude>
          </excludes>
        </configuration>
      </plugin>
    </plugins>
  </build>

  <profiles>
    <profile>
      <id>skipLibraryApiTests</id>
      <activation>
        <property>
          <name>skipLibraryApiTests</name>
        </property>
      </activation>
      <build>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-surefire-plugin</artifactId>
            <configuration>
              <skip>true</skip>
            </configuration>
          </plugin>
          <plugin>
            <groupId>org.jacoco</groupId>
            <artifactId>jacoco-maven-plugin</artifactId>
            <configuration>
              <skip>true</skip>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
    <profile>
      <id>docs</id>
      <build>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-dependency-plugin</artifactId>
            <executions>
              <execution>
                <id>unpack-bulk-export-sources</id>
                <phase>generate-sources</phase>
                <goals>
                  <goal>unpack-dependencies</goal>
                </goals>
                <configuration>
                  <includeGroupIds>au.csiro.fhir</includeGroupIds>
                  <includeArtifactIds>bulk-export</includeArtifactIds>
                  <includeClassifiers>sources</includeClassifiers>
                  <excludeTransitive>true</excludeTransitive>
                  <outputDirectory>${project.build.directory}/unpacked-sources/bulk-export</outputDirectory>
                </configuration>
              </execution>
              <execution>
                <id>unpack-fhirpath-sources</id>
                <phase>generate-sources</phase>
                <goals>
                  <goal>unpack-dependencies</goal>
                </goals>
                <configuration>
                  <includeGroupIds>au.csiro.pathling</includeGroupIds>
                  <includeArtifactIds>fhirpath</includeArtifactIds>
                  <includeClassifiers>sources</includeClassifiers>
                  <excludeTransitive>true</excludeTransitive>
                  <outputDirectory>${project.build.directory}/unpacked-sources/fhirpath</outputDirectory>
                </configuration>
              </execution>
              <execution>
                <id>unpack-terminology-sources</id>
                <phase>generate-sources</phase>
                <goals>
                  <goal>unpack-dependencies</goal>
                </goals>
                <configuration>
                  <includeGroupIds>au.csiro.pathling</includeGroupIds>
                  <includeArtifactIds>terminology</includeArtifactIds>
                  <includeClassifiers>sources</includeClassifiers>
                  <excludeTransitive>true</excludeTransitive>
                  <outputDirectory>${project.build.directory}/unpacked-sources/terminology</outputDirectory>
                </configuration>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-javadoc-plugin</artifactId>
            <configuration>
              <overview>src/main/javadoc/overview.html</overview>
              <sourcepath>src/main/java:${project.build.directory}/unpacked-sources/bulk-export:${project.build.directory}/unpacked-sources/fhirpath:${project.build.directory}/unpacked-sources/terminology</sourcepath>
              <subpackages>au.csiro.pathling:au.csiro.fhir.export</subpackages>
              <groups>
                <group>
                  <title>Pathling Library API</title>
                  <packages>au.csiro.pathling.library*</packages>
                </group>
                <group>
                  <title>Pathling Core Interfaces</title>
                  <packages>au.csiro.pathling.io*</packages>
                </group>
                <group>
                  <title>Pathling Terminology Functions</title>
                  <packages>au.csiro.pathling.sql*</packages>
                </group>
                <group>
                  <title>FHIR Bulk Export Client</title>
                  <packages>au.csiro.fhir.export*</packages>
                </group>
              </groups>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>

</project>