Description

<dependency>
    <groupId>au.csiro.pathling</groupId>
    <artifactId>encoders</artifactId>
    <version>9.6.0</version>
</dependency>

<?xml version="1.0" encoding="UTF-8"?>
<!--

    This is a modified version of the Bunsen library, originally published at
    https://github.com/cerner/bunsen.

    Bunsen is copyright 2017 Cerner Innovation, Inc., and is licensed under
    the Apache License, version 2.0 (http://www.apache.org/licenses/LICENSE-2.0).

    These modifications are copyright 2018-2026 Commonwealth Scientific
    and Industrial Research Organisation (CSIRO) ABN 41 687 119 230.

    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at

        http://www.apache.org/licenses/LICENSE-2.0

    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,
    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and
    limitations under the License.

-->

<project xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <groupId>au.csiro.pathling</groupId>
    <artifactId>pathling</artifactId>
    <version>9.6.0</version>
  </parent>
  <artifactId>encoders</artifactId>
  <packaging>jar</packaging>

  <name>Pathling Encoders</name>
  <description>Encoders for transforming FHIR data into Spark Datasets.</description>

  <developers>
    <developer>
      <name>John Grimes</name>
      <email>John.Grimes@csiro.au</email>
      <url>https://github.com/johngrimes</url>
    </developer>
    <developer>
      <name>Piotr Szul</name>
      <email>Piotr.Szul@csiro.au</email>
      <url>https://github.com/piotrszul</url>
    </developer>
    <developer>
      <name>Ryan Brush</name>
      <email>rbrush@cerner.com</email>
      <url>https://github.com/rbrush</url>
    </developer>
  </developers>

  <dependencies>

    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>utilities</artifactId>
    </dependency>

    <dependency>
      <groupId>org.scala-lang</groupId>
      <artifactId>scala-library</artifactId>
      <scope>provided</scope>
    </dependency>

    <!-- Apache Spark -->
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-core_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-sql_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-catalyst_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>org.apache.spark</groupId>
      <artifactId>spark-unsafe_${pathling.scalaVersion}</artifactId>
      <scope>provided</scope>
    </dependency>
    <!-- HAPI FHIR -->
    <dependency>
      <groupId>ca.uhn.hapi.fhir</groupId>
      <artifactId>hapi-fhir-base</artifactId>
      <exclusions>
        <exclusion>
          <groupId>org.slf4j</groupId>
          <artifactId>jcl-over-slf4j</artifactId>
        </exclusion>
        <exclusion>
          <groupId>com.google.code.findbugs</groupId>
          <artifactId>jsr305</artifactId>
        </exclusion>
      </exclusions>
    </dependency>
    <dependency>
      <groupId>ca.uhn.hapi.fhir</groupId>
      <artifactId>hapi-fhir-structures-r4</artifactId>
    </dependency>

    <!-- UCUM -->
    <dependency>
      <groupId>io.github.fhnaumann</groupId>
      <artifactId>ucumate-core</artifactId>
      <version>1.0.8</version>
      <exclusions>
        <exclusion>
          <groupId>io.github.fhnaumann</groupId>
          <artifactId>ucumate-test-utils</artifactId>
        </exclusion>
      </exclusions>
    </dependency>

    <dependency>
      <groupId>com.google.code.findbugs</groupId>
      <artifactId>jsr305</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>commons-lang</groupId>
      <artifactId>commons-lang</artifactId>
      <scope>provided</scope>
    </dependency>
    <dependency>
      <groupId>jakarta.validation</groupId>
      <artifactId>jakarta.validation-api</artifactId>
      <scope>provided</scope>
    </dependency>

    <!-- Testing -->
    <dependency>
      <groupId>au.csiro.pathling</groupId>
      <artifactId>utilities</artifactId>
      <type>test-jar</type>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-engine</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-api</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.junit.jupiter</groupId>
      <artifactId>junit-jupiter-params</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>joda-time</groupId>
      <artifactId>joda-time</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
    </dependency>
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.skyscreamer</groupId>
      <artifactId>jsonassert</artifactId>
      <version>1.5.3</version>
      <scope>test</scope>
    </dependency>
    <dependency>
      <groupId>org.json</groupId>
      <artifactId>json</artifactId>
      <version>20231013</version>
      <scope>test</scope>
    </dependency>

    <!-- Lombok -->
    <dependency>
      <groupId>org.projectlombok</groupId>
      <artifactId>lombok</artifactId>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <plugin>
        <groupId>net.alchim31.maven</groupId>
        <artifactId>scala-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-source-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.jacoco</groupId>
        <artifactId>jacoco-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>com.mycila</groupId>
        <artifactId>license-maven-plugin</artifactId>
        <configuration>
          <licenseSets>
            <licenseSet>
              <header>config/license/header-encoders.txt</header>
            </licenseSet>
          </licenseSets>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jar-plugin</artifactId>
        <executions>
          <execution>
            <goals>
              <goal>test-jar</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <excludes>
            <exclude>**/logback.xml</exclude>
          </excludes>
        </configuration>
      </plugin>
    </plugins>
  </build>

  <profiles>
    <profile>
      <id>skipEncodersTests</id>
      <activation>
        <property>
          <name>skipEncodersTests</name>
        </property>
      </activation>
      <build>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-surefire-plugin</artifactId>
            <configuration>
              <skip>true</skip>
            </configuration>
          </plugin>
          <plugin>
            <groupId>org.jacoco</groupId>
            <artifactId>jacoco-maven-plugin</artifactId>
            <configuration>
              <skip>true</skip>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
    <profile>
      <id>docs</id>
      <build>
        <plugins>
          <plugin>
            <groupId>net.alchim31.maven</groupId>
            <artifactId>scala-maven-plugin</artifactId>
            <executions>
              <execution>
                <id>attach-scaladocs</id>
                <phase>prepare-package</phase>
                <goals>
                  <goal>doc-jar</goal>
                </goals>
                <configuration>
                  <excludes>
                    <!-- Exclude Java files that access package-private Spark classes -->
                    <exclude>**/ValueFunctions.java</exclude>
                    <exclude>**/ColumnFunctions.java</exclude>
                  </excludes>
                </configuration>
              </execution>
            </executions>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>

</project>